SMTL ID : 7o1l.1

Structure of Mycobacterium tuberculosis beta-oxidation trifunctional enzyme alpha-H462A mutant

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

hetero-2-2-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 3 residues within 4Å: Chain A: R.195, L.200, L.201 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.195, A:R.195, A:L.201 GOL.2: 5 residues within 4Å: Chain A: T.158, W.244, V.245, E.246, K.247 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.244, A:E.246, A:K.247 GOL.8: 9 residues within 4Å: Chain B: G.83, G.84, G.132, E.135, E.157, L.163, G.165, G.166, F.303 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:G.84, B:E.135, B:E.157, B:G.165, B:G.166 GOL.14: 3 residues within 4Å: Chain C: R.195, L.200, L.201 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.195, C:R.195, C:L.201 GOL.15: 5 residues within 4Å: Chain C: T.158, W.244, V.245, E.246, K.247 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:W.244, C:E.246, C:K.247 GOL.21: 9 residues within 4Å: Chain D: G.83, G.84, G.132, E.135, E.157, L.163, G.165, G.166, F.303 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:G.84, D:E.135, D:G.165, D:G.166

2 x COA: COENZYME A(Non-covalent)

COA.3: 17 residues within 4Å: Chain A: C.92, M.127, Q.149, Q.175, R.210, T.213, L.218, L.221, F.225, T.253, G.254, G.255, S.257, S.258, I.260, F.330, L.361 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.225, A:F.330 Hydrogen bonds: A:Q.149, A:Q.175, A:R.210, A:R.210, A:T.213, A:S.258, A:S.258, A:S.258 pi-Cation interactions: A:R.210, A:R.210 COA.16: 17 residues within 4Å: Chain C: C.92, M.127, Q.149, Q.175, R.210, T.213, L.218, L.221, F.225, T.253, G.254, G.255, S.257, S.258, I.260, F.330, L.361 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:F.225, C:F.330 Hydrogen bonds: C:Q.149, C:Q.175, C:R.210, C:R.210, C:T.213, C:T.213, C:S.258, C:S.258, C:S.258 pi-Cation interactions: C:R.210, C:R.210

18 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 4 residues within 4Å: Chain A: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.5: 2 residues within 4Å: Chain A: N.380, R.402 Ligand excluded by PLIP SO4.6: 4 residues within 4Å: Chain A: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.7: 2 residues within 4Å: Chain A: P.193, R.195 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.10: 3 residues within 4Å: Chain B: S.674, T.675, A.676 Ligand excluded by PLIP SO4.11: 3 residues within 4Å: Chain B: V.290, D.291 Chain C: H.24 Ligand excluded by PLIP SO4.12: 3 residues within 4Å: Chain A: H.243 Chain B: P.647, L.648 Ligand excluded by PLIP SO4.13: 2 residues within 4Å: Chain B: P.236, K.239 Ligand excluded by PLIP SO4.17: 4 residues within 4Å: Chain C: S.163, R.164, N.249, V.251 Ligand excluded by PLIP SO4.18: 2 residues within 4Å: Chain C: N.380, R.402 Ligand excluded by PLIP SO4.19: 4 residues within 4Å: Chain C: R.173, K.177, D.345, E.346 Ligand excluded by PLIP SO4.20: 2 residues within 4Å: Chain C: P.193, R.195 Ligand excluded by PLIP SO4.22: 4 residues within 4Å: Chain D: P.275, G.309, Q.310, V.311 Ligand excluded by PLIP SO4.23: 3 residues within 4Å: Chain D: S.674, T.675, A.676 Ligand excluded by PLIP SO4.24: 3 residues within 4Å: Chain A: H.24 Chain D: V.290, D.291 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain C: H.243 Chain D: P.647, L.648 Ligand excluded by PLIP SO4.26: 2 residues within 4Å: Chain D: P.236, K.239 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dalwani, S. et al., Substrate specificity and conformational flexibility properties of the Mycobacterium tuberculosis beta-oxidation trifunctional enzyme. J.Struct.Biol. (2021)

Release Date

2021-08-25

Peptides

Putative acyltransferase Rv0859: AC
3-hydroxyacyl-CoA dehydrogenase: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

C
D

B
A

D
A

Putative acyltransferase Rv0859

3-hydroxyacyl-CoA dehydrogenase

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