SMTL ID : 7oku.1

X-ray structure of soluble EPCR in P3121 space group

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 7 residues within 4Å: Chain A: H.14, L.16, N.32, A.33, S.34, L.39 Ligands: EDO.4 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 3 residues within 4Å: Chain A: A.92, P.94, N.121 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 2 residues within 4Å: Chain A: N.49, T.51 No protein-ligand interaction detected (PLIP)

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: G.31, N.32, L.39 Ligands: NAG-NAG.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.31 Water bridges: A:Q.30 EDO.6: 2 residues within 4Å: Chain A: Q.151, N.154 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.151

1 x PTY: PHOSPHATIDYLETHANOLAMINE(Non-covalent)

PTY.5: 24 residues within 4Å: Chain A: L.13, M.15, L.16, N.32, A.33, H.41, G.70, L.71, Y.74, L.81, V.82, I.97, L.101, V.118, V.120, F.125, W.135, R.158, T.159, E.162, L.163, F.166, T.170, Y.174 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.13, A:M.15, A:A.33, A:H.41, A:L.71, A:Y.74, A:Y.74, A:Y.74, A:L.81, A:V.82, A:I.97, A:L.101, A:V.118, A:V.118, A:V.120, A:W.135, A:T.159, A:F.166, A:F.166, A:Y.174 Hydrogen bonds: A:T.170

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Erausquin, E. et al., Identification of a broad lipid repertoire associated to the endothelial cell protein C receptor (EPCR). Sci Rep (2022)

Release Date

2022-06-22

Peptides

Endothelial protein C receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothelial protein C receptor

Related Entries With Identical Sequence