SMTL ID : 7orl.1

La Crosse virus polymerase at transcription initiation stage

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

1 x GTG: 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE-5'-GUANOSINE(Non-covalent)

GTG.1: 15 residues within 4Å: Chain A: A.1 Chain B: Y.714, V.1858, W.1860, W.1863, Q.1864, R.1867, R.1920, H.1921, G.1922, K.2024, K.2025, A.2026, H.2027, F.2028 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:Q.1864, B:R.1867, B:R.1920, B:G.1922, B:G.1922, B:K.2025, B:A.2026, B:A.2026, B:H.2027, B:F.2028 Salt bridges: B:R.1867, B:R.1867, B:K.2024, B:K.2024, B:K.2024 pi-Stacking: B:W.1860, B:W.1860 pi-Cation interactions: B:R.1867, B:R.1867, B:F.2028

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain B: A.1072, D.1073, D.1201, E.1250 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:D.1201

1 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 7 residues within 4Å: Chain A: A.15 Chain B: M.1074, S.1075, K.1076, W.1077, Q.1158, D.1200 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:K.1076, B:W.1077, B:Q.1158, B:D.1200, B:D.1200, B:D.1200 Salt bridges: B:K.1241

1 x ZN: ZINC ION(Non-covalent)

ZN.4: 5 residues within 4Å: Chain B: C.2077, H.2182, I.2186, D.2191, H.2195 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.2077, B:H.2182, B:D.2191, B:H.2195

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arragain, B. et al., Structural snapshots of La Crosse virus polymerase reveal the mechanisms underlying Peribunyaviridae replication and transcription. Nat Commun (2022)

Release Date

2022-02-16

Peptides

RNA-directed RNA polymerase L: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

RNA-directed RNA polymerase L

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