SMTL ID : 7ozd.2 (1 other biounit)

FGFR1 kinase domain (residues 458-765) with mutations C488A, C584S in complex with 34.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.82 Å

Oligo State

monomer

Ligands

1 x 42I: N-[6-(4-hydroxyphenyl)-1H-indazol-3-yl]benzamide(Non-covalent)

42I.1: 19 residues within 4Å: Chain A: L.28, V.36, A.56, K.58, E.75, I.89, V.105, E.106, Y.107, A.108, S.109, K.110, G.111, L.174, A.184, D.185, L.188 Ligands: SO4.4, EDO.5 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.28, A:V.36, A:A.56, A:K.58, A:L.174 Hydrogen bonds: A:K.58, A:E.106, A:A.108, A:A.108

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: R.114, R.171, T.201, N.203, R.205, W.210 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.201, A:N.203 Water bridges: A:R.205 Salt bridges: A:R.114, A:R.171, A:R.205 SO4.3: 3 residues within 4Å: Chain A: K.86, Y.149, R.153 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.86 Salt bridges: A:K.86, A:R.153 SO4.4: 6 residues within 4Å: Chain A: R.171, N.172, L.174, A.184, D.185 Ligands: 42I.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.171, A:D.185

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 10 residues within 4Å: Chain A: E.75, M.79, I.89, V.105, A.184, D.185, F.186, G.187, L.188 Ligands: 42I.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.75, A:D.185, A:F.186, A:G.187 EDO.6: 8 residues within 4Å: Chain A: W.228, V.232, Y.245, L.257, H.261, R.262, M.263, W.281 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.228, A:Y.245, A:Y.245, A:M.263

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Turner, L.D. et al., From Fragment to Lead: De Novo Design and Development toward a Selective FGFR2 Inhibitor. J.Med.Chem. (2022)

Release Date

2021-12-01

Peptides

Fibroblast growth factor receptor 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
BBB

Fibroblast growth factor receptor 1

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