SMTL ID : 7pzk.1

HBc-WT in complex with Triton X-100

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 3.10 Å

Oligo State

homo-tetramer

Ligands

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.1: 14 residues within 4Å: Chain A: V.13, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 Chain B: Q.57, L.60, C.61, E.64 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.62, A:L.65, A:K.96, A:F.97, B:E.64 Hydrogen bonds: A:K.96, A:K.96, A:Q.99 TRT.2: 12 residues within 4Å: Chain A: C.61, E.64 Chain B: A.58, C.61, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 8 PLIP interactions: 7 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:A.58, B:L.65, B:K.96, B:F.97, B:L.100, B:L.100, A:E.64 Hydrogen bonds: B:K.96 TRT.3: 14 residues within 4Å: Chain C: V.13, A.58, C.61, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 Chain D: C.61, E.64 9 PLIP interactions: 8 interactions with chain C, 1 interactions with chain D Hydrophobic interactions: C:A.58, C:W.62, C:L.65, C:F.97, C:F.97, C:L.100, C:L.100, D:E.64 Hydrogen bonds: C:K.96 TRT.4: 15 residues within 4Å: Chain C: Q.57, L.60, C.61, E.64 Chain D: Y.6, V.13, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain D Hydrophobic interactions: C:E.64, C:E.64, D:W.62, D:F.97 Hydrogen bonds: D:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makbul, C. et al., Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97. Viruses (2021)

Release Date

2021-12-08

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Capsid protein

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