SMTL ID : 7pzn.1

wt HBc capsid like particles in complex with inhibitory peptide SLLGRM and Triton X-100

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-4-1-mer

Ligands

4 x TRT: FRAGMENT OF TRITON X-100(Non-covalent)

TRT.1: 11 residues within 4Å: Chain A: V.13, A.58, L.65, N.92, M.93, L.95, K.96, Q.99, L.100 Chain B: C.61, E.64 8 PLIP interactions: 1 interactions with chain B, 7 interactions with chain A Hydrophobic interactions: B:E.64, A:A.58, A:L.65, A:K.96, A:L.100, A:L.100 Hydrogen bonds: A:K.96, A:K.96 TRT.2: 13 residues within 4Å: Chain A: L.60, C.61, E.64 Chain B: V.13, C.61, W.62, L.65, M.93, L.95, K.96, F.97, Q.99, L.100 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrophobic interactions: B:W.62, B:L.65, B:F.97, B:L.100, A:E.64, A:E.64 Hydrogen bonds: B:K.96 TRT.3: 14 residues within 4Å: Chain C: P.5, V.13, C.61, W.62, N.92, M.93, L.95, K.96, F.97, L.100 Chain D: Q.57, L.60, C.61, E.64 9 PLIP interactions: 7 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:P.5, C:W.62, C:K.96, C:F.97, C:L.100, D:E.64, D:E.64 Hydrogen bonds: C:K.96, C:K.96 TRT.4: 13 residues within 4Å: Chain C: Q.57, L.60, C.61 Chain D: P.5, W.62, L.65, N.92, M.93, L.95, K.96, F.97, Q.99, L.100 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:P.5, D:W.62, D:L.65, D:F.97, D:L.100 Hydrogen bonds: D:K.96

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Makbul, C. et al., Binding of a Pocket Factor to Hepatitis B Virus Capsids Changes the Rotamer Conformation of Phenylalanine 97. Viruses (2021)

Release Date

2021-12-08

Peptides

Capsid protein: ABCD
SLLGRM, modelled as poly-A,SLLGRM, modelled as poly-A: E

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

E
M

Capsid protein

SLLGRM, modelled as poly-A,SLLGRM, modelled as poly-A

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