SMTL ID : 8pwo.1

Hepatitis B core protein with bound Geraniol

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x 64Z: Geraniol(Non-covalent)

64Z.1: 13 residues within 4Å: Chain A: P.5, Y.6, V.13, A.58, C.61, K.96, F.97, Q.99, L.100 Chain B: Q.57, L.60, C.61, E.64 6 PLIP interactions: 4 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:K.96, A:L.100, B:L.60, B:L.60 Hydrogen bonds: A:Y.6, A:Y.6 64Z.2: 12 residues within 4Å: Chain A: Q.57, L.60, C.61, E.64 Chain B: P.5, Y.6, V.13, A.58, K.96, F.97, Q.99, L.100 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrophobic interactions: A:L.60, A:E.64, B:K.96, B:K.96, B:F.97, B:L.100 Hydrogen bonds: B:Y.6, B:Q.99 64Z.3: 13 residues within 4Å: Chain C: P.5, Y.6, V.13, A.58, C.61, K.96, F.97, Q.99, L.100 Chain D: Q.57, L.60, C.61, E.64 6 PLIP interactions: 4 interactions with chain C, 2 interactions with chain D Hydrophobic interactions: C:P.5, C:K.96, C:F.97, C:L.100, D:L.60, D:E.64 64Z.4: 12 residues within 4Å: Chain C: Q.57, L.60, C.61, E.64 Chain D: P.5, Y.6, A.58, C.61, K.96, F.97, Q.99, L.100 10 PLIP interactions: 5 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:Q.57, C:L.60, C:L.60, C:C.61, C:E.64, D:P.5, D:K.96, D:F.97, D:L.100 Hydrogen bonds: D:Y.6

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Khayenko, V. et al., Peptide dimers aggregate Hepatitis B core proteins in live cells. To Be Published

Release Date

2024-07-31

Peptides

Capsid protein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

C
C

D
D

Capsid protein

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