SMTL ID : 7q5c.1

Crystal structure of OmpG in space group 96

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.72 Å

Oligo State

monomer

Ligands

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.1: 7 residues within 4Å: Chain A: I.11, G.12, A.13, V.35, Y.36, F.37, V.277 No protein-ligand interaction detected (PLIP) PG4.3: 9 residues within 4Å: Chain A: H.75, T.89, K.114, A.116, D.118, W.132, S.134, Y.136, E.153 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.89, A:K.114, A:A.116, A:D.118, A:Y.136, A:Y.136

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 10 residues within 4Å: Chain A: A.13, M.14, Y.15, I.17, A.31, P.33, S.34, V.35, V.56, D.57 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.13 Hydrogen bonds: A:Y.15, A:Y.15, A:D.57, A:D.57 BOG.4: 10 residues within 4Å: Chain A: V.35, L.48, A.49, Y.50, W.66, D.68, P.70, G.96, H.98, N.109 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.48 Hydrogen bonds: A:H.98

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 2 residues within 4Å: Chain A: F.240, E.254 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, T.T.M. et al., Experimental phase diagrams to optimise OmpG. To Be Published

Release Date

2022-11-16

Peptides

Outer membrane porin G: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
XXX

Membrane

We predict this structure to be a membrane protein.
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Outer membrane porin G

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