SMTL ID : 7qb2.1

Pim1 in complex with (E)-4-((6-amino-1-methyl-2-oxoindolin-3-ylidene)methyl)benzoic acid and Pimtide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.53 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.233, P.241, F.242, E.247, Q.252, V.253, F.254, R.256 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.252, A:F.254, A:R.256, A:R.256

1 x A7X: 4-[(E)-(6-azanyl-1-methyl-2-oxidanylidene-indol-3-ylidene)methyl]benzoic acid(Non-covalent)

A7X.2: 12 residues within 4Å: Chain A: L.44, G.45, V.52, K.67, I.104, L.120, R.122, V.126, D.128, L.174, I.185, D.186 15 PLIP interactions: 14 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:V.52, A:I.104, A:L.120, A:L.174, A:L.174, A:I.185, A:I.185 Hydrogen bonds: A:D.128, A:D.186 Water bridges: A:K.67, A:R.122, A:D.128, A:F.187, B:R.6 Salt bridges: A:K.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heyder, L. et al., Pose, duplicate, then elaborate: Steps towards increased affinity for inhibitors targeting the specificity surface of the Pim-1 kinase. Eur.J.Med.Chem. (2023)

Release Date

2022-11-30

Peptides

Serine/threonine-protein kinase pim-1: A
Pimtide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

Serine/threonine-protein kinase pim-1

Pimtide

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