SMTL ID : 7qsd.1

Bovine complex I in the active state at 3.1 A

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

5 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.1: 8 residues within 4Å: Chain A: W.23, L.24, P.25, Q.26 Chain P: S.308, F.310, W.313 Ligands: PC1.4 1 PLIP interactions: 1 interactions with chain P pi-Cation interactions: P:F.310 PC1.4: 14 residues within 4Å: Chain A: L.24, Q.26 Chain B: L.70, L.73, I.74, R.78, L.210, W.213, R.216 Chain H: F.56, I.57 Chain P: D.90, F.310 Ligands: PC1.1 10 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B, 1 interactions with chain H, 1 interactions with chain P Hydrophobic interactions: A:L.24, A:L.24, B:L.70, B:L.73, B:W.213, H:F.56 Hydrogen bonds: B:R.78, B:W.213 Salt bridges: B:R.216, P:D.90 PC1.5: 10 residues within 4Å: Chain B: D.72, W.76, R.79, K.205 Chain H: V.39, I.49, I.53 Chain g: R.29, N.31, W.75 8 PLIP interactions: 2 interactions with chain H, 6 interactions with chain B Hydrophobic interactions: H:I.49, H:I.53, B:W.76, B:W.76 Salt bridges: B:R.79, B:R.79, B:K.205, B:K.205 PC1.37: 10 residues within 4Å: Chain 3: F.11, Q.12, F.13, R.78 Chain 4: F.3, F.4 Chain N: Y.143, L.202, L.346, E.347 9 PLIP interactions: 5 interactions with chain 3, 3 interactions with chain 4, 1 interactions with chain N Hydrophobic interactions: 3:F.11, 4:F.4, 4:F.4, N:L.346 Hydrogen bonds: 3:F.11, 3:Q.12 Salt bridges: 3:R.78, 3:R.78 pi-Cation interactions: 4:F.3 PC1.38: 22 residues within 4Å: Chain 6: V.98, L.99, V.100, G.102, S.103, V.106, A.107, Y.108 Chain 7: I.75 Chain L: W.66 Chain M: P.64, I.67, L.68, W.71, I.317, P.443, L.446, L.447, L.449, N.450 Ligands: 3PE.19, CDL.39 16 PLIP interactions: 1 interactions with chain 7, 9 interactions with chain M, 6 interactions with chain 6 Hydrophobic interactions: 7:I.75, M:L.68, M:W.71, M:W.71, M:I.317, M:P.443, M:L.446, M:L.446, M:L.449, M:N.450, 6:V.98, 6:L.99, 6:L.99, 6:V.100, 6:V.106, 6:V.106

13 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.2: 14 residues within 4Å: Chain 1: L.9, E.16, L.19, S.22, F.23, A.26 Chain A: A.99, A.103, W.106, T.107 Chain H: K.291, P.295, A.299, M.302 13 PLIP interactions: 9 interactions with chain 1, 2 interactions with chain A, 2 interactions with chain H Hydrophobic interactions: 1:L.9, 1:E.16, 1:L.19, 1:L.19, 1:F.23, 1:F.23, 1:F.23, 1:A.26, A:A.103, A:W.106, H:A.299 Hydrogen bonds: 1:E.16 Salt bridges: H:K.291 3PE.12: 23 residues within 4Å: Chain 1: E.16, I.25 Chain D: R.266 Chain H: W.179, M.183, M.184, F.186, I.187, F.198, Y.277, F.280, L.288, N.292, F.293, L.296 Chain I: T.60, L.61, W.63, L.66, I.67, L.70 Chain Z: I.40, L.43 17 PLIP interactions: 2 interactions with chain I, 2 interactions with chain 1, 10 interactions with chain H, 2 interactions with chain D, 1 interactions with chain Z Hydrophobic interactions: I:L.66, I:I.67, 1:I.25, H:W.179, H:F.186, H:I.187, H:F.198, H:Y.277, H:F.280, H:F.280, H:L.288, H:F.293, Z:L.43 Hydrogen bonds: 1:E.16, H:N.292 Salt bridges: D:R.266, D:R.266 3PE.15: 18 residues within 4Å: Chain 0: A.39 Chain A: L.3, M.4 Chain H: M.98, N.99, L.100, F.104 Chain J: I.5, C.41, L.45, N.46, S.50, L.54 Chain Z: F.140, I.141, W.142, Y.143, T.144 7 PLIP interactions: 2 interactions with chain H, 2 interactions with chain J, 1 interactions with chain 0, 2 interactions with chain A Hydrogen bonds: H:N.99, H:L.100, 0:A.39 Hydrophobic interactions: J:I.5, J:L.45, A:L.3, A:L.3 3PE.16: 12 residues within 4Å: Chain J: S.21, S.22, A.88, A.92 Chain K: M.10, T.13, V.14, V.17, M.21, Y.22, R.23 Chain L: K.585 8 PLIP interactions: 6 interactions with chain K, 1 interactions with chain J, 1 interactions with chain L Hydrophobic interactions: K:T.13, K:V.14, K:V.14, K:M.21 Hydrogen bonds: K:R.23 Salt bridges: K:R.23, J:K.23, L:K.585 3PE.17: 14 residues within 4Å: Chain L: T.166, Q.170, L.173, Y.174, G.228, L.229, F.529, H.534, A.537, P.538, N.541 Chain M: L.405 Chain b: N.115, R.116 11 PLIP interactions: 10 interactions with chain L, 1 interactions with chain M Hydrophobic interactions: L:L.173, L:Y.174, L:L.229, L:F.529, L:A.537, L:P.538, M:L.405 Hydrogen bonds: L:Q.170, L:S.235 Salt bridges: L:H.534, L:H.534 3PE.19: 17 residues within 4Å: Chain 8: I.80, Y.84, H.88, K.92 Chain L: N.65, W.66, H.67, W.68, S.77, L.78, N.136, F.138, I.142 Chain M: P.371, L.449 Ligands: PC1.38, CDL.39 15 PLIP interactions: 8 interactions with chain L, 2 interactions with chain 7, 2 interactions with chain M, 3 interactions with chain 8 Hydrophobic interactions: L:W.66, L:W.66, L:W.68, L:L.78, L:F.138, L:F.138, L:I.142, M:P.371, M:L.449 Hydrogen bonds: L:H.67, 7:K.114, 7:K.114 Salt bridges: 8:H.88, 8:K.92, 8:K.92 3PE.20: 16 residues within 4Å: Chain L: L.576, V.577, Q.580, T.594, S.598, F.604 Chain N: P.110, F.113, L.157, L.160 Chain Y: V.36, Y.39, S.40, L.43, K.44, Y.59 13 PLIP interactions: 2 interactions with chain L, 8 interactions with chain Y, 3 interactions with chain N Hydrophobic interactions: L:T.594, L:F.604, Y:Y.39, Y:Y.39, Y:Y.39, Y:L.43, N:P.110, N:F.113, N:L.157 Hydrogen bonds: Y:S.40, Y:K.44, Y:K.44 Salt bridges: Y:K.44 3PE.21: 14 residues within 4Å: Chain M: A.155, P.159, Y.166, S.191, F.194, M.195, A.198 Chain N: I.276, I.277, F.281, I.284 Chain Y: L.124, W.133 Ligands: LMT.24 13 PLIP interactions: 6 interactions with chain M, 3 interactions with chain N, 4 interactions with chain Y Hydrophobic interactions: M:P.159, M:P.159, M:M.195, N:I.276, N:F.281, N:I.284, Y:L.124, Y:W.133, Y:W.133 Hydrogen bonds: M:Y.166, M:S.191, M:S.191, Y:E.131 3PE.23: 13 residues within 4Å: Chain 3: C.40, L.43, I.44, V.53, L.54 Chain M: M.12, W.16, T.90, L.94, T.97, M.98 Chain O: K.326 Ligands: 3PE.25 7 PLIP interactions: 2 interactions with chain 3, 1 interactions with chain O, 4 interactions with chain M Hydrophobic interactions: 3:L.43, 3:I.44, M:W.16, M:W.16, M:L.94, M:T.97 Salt bridges: O:K.326 3PE.25: 18 residues within 4Å: Chain 3: R.51, V.53 Chain M: T.90, R.91, L.94, M.98, V.127, I.131, R.135 Chain N: P.238, I.239, V.242, A.246, L.257, T.301, M.335 Chain O: Y.327 Ligands: 3PE.23 12 PLIP interactions: 6 interactions with chain N, 5 interactions with chain M, 1 interactions with chain 3 Hydrophobic interactions: N:V.242, N:V.242, N:A.246, N:L.257, N:T.301, M:R.91, M:L.94, M:V.127, M:I.131, M:I.131 Hydrogen bonds: N:I.239, 3:R.51 3PE.26: 16 residues within 4Å: Chain N: F.6, K.46, S.125, L.128, I.129, T.132, W.133, L.136, I.209, I.210, S.213, T.217, M.220, K.322, T.324, M.329 12 PLIP interactions: 12 interactions with chain N Hydrophobic interactions: N:L.128, N:L.128, N:I.129, N:L.136, N:I.209, N:I.210, N:T.217 Hydrogen bonds: N:S.125, N:S.125, N:T.324 Salt bridges: N:K.46, N:K.322 3PE.33: 11 residues within 4Å: Chain 3: P.29, R.30, F.33 Chain 5: N.30 Chain M: L.55, L.121 Chain N: P.338 Chain X: F.169, W.170, T.171, M.172 8 PLIP interactions: 1 interactions with chain N, 3 interactions with chain X, 2 interactions with chain M, 2 interactions with chain 3 Hydrophobic interactions: N:P.338, X:F.169, X:F.169, M:L.55, M:L.121, 3:R.30, 3:F.33 Hydrogen bonds: X:T.171 3PE.36: 16 residues within 4Å: Chain 2: K.43, L.46, T.47, T.50 Chain 3: V.34, D.45, R.49, R.60, Y.64, S.67, F.68, V.71 Chain N: T.328, L.332, M.336, L.339 12 PLIP interactions: 2 interactions with chain N, 8 interactions with chain 3, 2 interactions with chain 2 Hydrophobic interactions: N:L.332, N:L.339, 3:V.34, 3:R.60, 3:Y.64, 3:Y.64, 3:F.68, 3:F.68, 3:V.71 Salt bridges: 3:R.60, 2:K.43 Hydrogen bonds: 2:K.43

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 13 residues within 4Å: Chain B: A.90, C.91, C.92, G.127, T.128, G.154, S.155, C.156, C.186, P.187 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.91, B:C.92, B:C.156, B:C.186 SF4.8: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.9: 12 residues within 4Å: Chain G: H.124, P.125, D.127, C.128, C.131, Q.133, G.134, C.137, L.139, Q.140, V.228, G.229 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:D.127 Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.10: 12 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, V.228, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.13: 12 residues within 4Å: Chain I: H.101, C.123, P.124, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158 SF4.14: 13 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, Y.145, C.162, P.163, V.164, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.6: 9 residues within 4Å: Chain E: C.135, T.137, P.139, C.140, C.176, L.177, G.178, A.179, C.180 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.135, E:C.140, E:C.176, E:C.180 FES.11: 10 residues within 4Å: Chain G: R.62, F.63, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.7: 18 residues within 4Å: Chain F: G.87, R.88, G.89, K.98, N.116, D.118, G.120, Y.204, I.205, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 16 PLIP interactions: 16 interactions with chain F Hydrophobic interactions: F:Y.204, F:I.205, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:R.88, F:G.89, F:N.116, F:D.118, F:G.120, F:G.207, F:E.209, F:N.244, F:T.247, F:T.247 Salt bridges: F:K.98

4 x CDL: CARDIOLIPIN(Non-covalent)

CDL.18: 16 residues within 4Å: Chain 7: L.68, L.71, R.72 Chain L: S.23, N.25, K.116, K.119, Y.120, L.123, T.127, M.150 Chain M: T.357, L.361, L.364, L.369, P.371 13 PLIP interactions: 4 interactions with chain M, 7 interactions with chain L, 2 interactions with chain 7 Hydrophobic interactions: M:L.361, M:L.364, M:L.369, L:L.123, L:T.127, 7:L.68 Hydrogen bonds: M:T.357, L:Y.120 Salt bridges: L:K.119, L:K.119, L:K.119, L:K.119, 7:R.72 CDL.34: 9 residues within 4Å: Chain L: F.602 Chain N: N.152, T.156 Chain Y: A.2, K.3, L.6, V.125, V.135, F.136 9 PLIP interactions: 2 interactions with chain N, 5 interactions with chain Y, 2 interactions with chain L Hydrophobic interactions: N:T.156, Y:L.6, Y:L.6, L:F.602, L:F.602 Hydrogen bonds: N:N.152, Y:V.135, Y:F.136 Salt bridges: Y:K.3 CDL.39: 22 residues within 4Å: Chain 6: S.103, T.104, A.107, Y.108 Chain 7: T.87, N.90, E.95, H.115 Chain 8: W.79, Y.83, Y.84, H.88 Chain L: L.9, L.12, L.13, N.65, I.130 Ligands: 3PE.19, PC1.38 Chain f: V.48, R.49, I.52 13 PLIP interactions: 6 interactions with chain 8, 2 interactions with chain f, 2 interactions with chain L, 1 interactions with chain 6, 2 interactions with chain 7 Hydrophobic interactions: 8:Y.83, 8:Y.83, 8:Y.83, 8:Y.84, 8:Y.84, f:V.48, L:L.13, L:I.130 Salt bridges: 8:H.88, f:R.49, 7:H.115 Hydrogen bonds: 6:Y.108, 7:N.90 CDL.40: 19 residues within 4Å: Chain 0: M.1, W.2, F.3, E.4, L.6, P.7, A.10 Chain H: Y.43 Chain g: L.3, V.6, R.9, G.10, Q.13, Y.23 Chain h: S.3, A.4, T.5, F.7, I.8 15 PLIP interactions: 8 interactions with chain 0, 3 interactions with chain g, 3 interactions with chain h, 1 interactions with chain H Hydrophobic interactions: 0:W.2, 0:F.3, 0:E.4, 0:L.6, 0:L.6, 0:L.6, 0:P.7, 0:A.10, g:L.3, h:F.7, h:I.8, H:Y.43 Hydrogen bonds: g:R.9, h:T.5 Salt bridges: g:R.9

3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.22: 15 residues within 4Å: Chain L: L.562, P.563, K.564, I.566, S.567 Chain M: N.144, L.147, Y.148, F.151, Y.152, A.155, L.212 Chain N: Y.291 Ligands: LMT.24 Chain c: Y.77 13 PLIP interactions: 6 interactions with chain M, 6 interactions with chain L, 1 interactions with chain N Hydrophobic interactions: M:Y.148, M:F.151, M:Y.152, M:A.155, M:L.212, L:L.562, L:I.566 Hydrogen bonds: M:N.144, L:K.564, L:K.564, L:S.567, N:Y.291 Salt bridges: L:K.564 LMT.24: 9 residues within 4Å: Chain D: Y.53 Chain L: S.567, L.568, M.571 Chain N: I.284, L.287, Y.291 Ligands: 3PE.21, LMT.22 4 PLIP interactions: 1 interactions with chain D, 3 interactions with chain N Hydrogen bonds: D:Y.53, N:Y.291 Hydrophobic interactions: N:I.284, N:L.287 LMT.35: 11 residues within 4Å: Chain 1: V.30, T.34, T.39, K.40, L.43 Chain A: L.84, N.85, L.88, T.89, F.93, I.96 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain 1 Hydrophobic interactions: A:I.96, 1:V.30 Hydrogen bonds: A:L.84

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.27: 19 residues within 4Å: Chain O: I.54, C.55, S.56, G.57, K.58, S.59, E.76, L.102, Y.106, Q.120, L.123, R.127, R.149, D.154, F.157, M.161, K.209, E.214 Ligands: MG.28 18 PLIP interactions: 18 interactions with chain O Hydrogen bonds: O:C.55, O:S.56, O:G.57, O:K.58, O:S.59, O:Y.106, O:Q.120, O:Q.120, O:R.127, O:R.149, O:E.214, O:Y.221 Salt bridges: O:K.58, O:K.58, O:K.58, O:R.149 pi-Stacking: O:F.157, O:F.157

1 x MG: MAGNESIUM ION(Non-covalent)

MG.28: 3 residues within 4Å: Chain O: S.59, E.76 Ligands: GTP.27 No protein-ligand interaction detected (PLIP)

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.29: 25 residues within 4Å: Chain B: R.216 Chain P: G.60, A.61, T.62, G.63, F.64, L.65, R.85, C.86, W.108, L.129, V.130, G.131, R.132, F.139, V.144, I.167, S.168, H.169, Y.180, K.184, A.204, E.205, I.206, R.212 23 PLIP interactions: 22 interactions with chain P, 1 interactions with chain B Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:C.86, P:L.129, P:G.131, P:R.132, P:K.184, P:I.206, P:I.206, P:R.212 Salt bridges: P:R.85, P:R.132, P:R.132, P:R.212, P:R.212, B:R.216 pi-Cation interactions: P:R.85, P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.30: 5 residues within 4Å: Chain R: C.87, G.89, H.96, C.112, C.115 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.87, R:H.96, R:C.112, R:C.115

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.31: 18 residues within 4Å: Chain T: S.112, L.113 Chain W: M.25, K.29, V.32, L.35, W.39, G.59, V.63, M.66, F.67, N.70, A.71, I.73, V.79, L.82, E.89, V.103 7 PLIP interactions: 6 interactions with chain W, 1 interactions with chain T Hydrophobic interactions: W:W.39, W:W.39, W:W.39, W:V.63, W:V.103, T:L.113 Hydrogen bonds: W:N.70 EHZ.32: 19 residues within 4Å: Chain L: Y.513 Chain U: S.112 Chain d: H.12, Q.13, V.16, L.27, W.30, L.44, R.47, F.48, H.51, K.52, E.54, A.60, L.63, A.67, E.70, F.71, G.74 13 PLIP interactions: 13 interactions with chain d Hydrophobic interactions: d:V.16, d:L.44, d:R.47, d:F.48, d:E.54, d:A.60, d:A.67 Hydrogen bonds: d:Q.13, d:R.47, d:H.51, d:K.52, d:K.52 Salt bridges: d:K.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bridges, H.R. et al., Bovine complex I in the active state at 3.1 A. To Be Published

Release Date

2022-03-02

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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