SMTL ID : 7qsn.1

Bovine complex I in lipid nanodisc, Deactive-apo

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

7 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.1: 15 residues within 4Å: Chain A: L.17, L.24, L.27, N.28, V.29, S.31 Chain B: I.74, R.78, L.210, W.213, R.216 Chain H: F.56, I.57 Chain P: D.90, F.310 14 PLIP interactions: 3 interactions with chain H, 3 interactions with chain A, 7 interactions with chain B, 1 interactions with chain P Hydrophobic interactions: H:F.56, H:F.56, H:I.57, A:L.17, A:L.24, A:L.27, B:L.210, B:W.213, B:W.213 Water bridges: B:W.213, B:R.216 Salt bridges: B:R.78, B:R.216, P:D.90 PC1.4: 16 residues within 4Å: Chain B: K.69, L.70, D.72, L.73, W.76, R.79, K.205 Chain H: L.46, I.49, A.52, I.53 Chain g: F.28, R.29, N.31, W.75, V.77 15 PLIP interactions: 11 interactions with chain B, 4 interactions with chain H Hydrophobic interactions: B:L.70, B:D.72, B:L.73, B:L.73, B:W.76, B:W.76, H:I.49, H:A.52, H:I.53, H:I.53 Water bridges: B:S.80 Salt bridges: B:R.79, B:R.79, B:K.205, B:K.205 PC1.17: 25 residues within 4Å: Chain 0: A.39, H.40 Chain A: M.1, L.3, M.4, L.7, F.11 Chain H: M.77, L.81, M.98, N.99, L.100, F.104, L.111 Chain J: G.38, V.39, L.45, N.46, S.50, L.54, F.57 Chain Z: F.140, I.141, W.142, Y.143 10 PLIP interactions: 1 interactions with chain A, 3 interactions with chain H, 1 interactions with chain Z, 5 interactions with chain J Hydrophobic interactions: A:F.11, H:L.81, J:V.39, J:F.57, J:F.57 Hydrogen bonds: H:N.99, H:L.100, J:S.50 pi-Cation interactions: Z:F.140 Water bridges: J:S.50 PC1.26: 15 residues within 4Å: Chain 6: S.103, V.106, A.107, Y.108 Chain L: W.66 Chain M: P.64, I.67, L.68, W.71, I.317, P.443, L.449, N.450 Ligands: 3PE.21, CDL.55 9 PLIP interactions: 8 interactions with chain M, 1 interactions with chain 6 Hydrophobic interactions: M:L.68, M:L.68, M:W.71, M:W.71, M:I.317, M:P.443, M:N.450, 6:V.106 Hydrogen bonds: M:N.450 PC1.28: 10 residues within 4Å: Chain M: N.188, W.190, F.194 Chain Y: L.88, L.91, M.127 Ligands: 3PE.27, 3PE.45 Chain c: I.95, Y.103 5 PLIP interactions: 1 interactions with chain c, 2 interactions with chain M, 2 interactions with chain Y Hydrophobic interactions: c:I.95, M:F.194, Y:L.88, Y:L.91 pi-Cation interactions: M:W.190 PC1.31: 7 residues within 4Å: Chain N: I.7, K.322 Chain O: G.27, P.28, L.29, I.32 Ligands: CDL.30 No protein-ligand interaction detected (PLIP) PC1.51: 19 residues within 4Å: Chain 3: T.3, R.8, T.10, F.11, Q.12, F.13, R.78 Chain 4: F.3, F.4 Chain N: M.21, W.133, L.136, Y.143, L.202, I.206, V.345, L.346 Ligands: CDL.30, 3PE.50 13 PLIP interactions: 4 interactions with chain N, 5 interactions with chain 3, 4 interactions with chain 4 Hydrophobic interactions: N:W.133, N:L.136, N:I.206, N:I.206, 3:F.13, 4:F.3, 4:F.4, 4:F.4 Hydrogen bonds: 3:F.11, 3:R.78 Salt bridges: 3:R.8, 3:R.78 pi-Cation interactions: 4:F.3

28 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.2: 9 residues within 4Å: Chain 4: D.13 Chain A: T.86, M.90 Chain J: T.151, W.152, I.155, W.159 Chain N: L.11, L.15 Ligand excluded by PLIP 3PE.12: 15 residues within 4Å: Chain H: Q.169, E.170, W.173, G.244, T.245, S.246, N.258, I.261, K.262, L.265, L.266, S.269 Chain I: L.70 Ligands: 3PE.13, 3PE.16 Ligand excluded by PLIP 3PE.13: 26 residues within 4Å: Chain 1: E.16, V.18, I.25 Chain D: R.266, N.270 Chain H: I.175, M.183, M.184, F.186, I.187, T.238, Y.277, L.288, N.292, F.293, L.296, L.300, W.303 Chain I: T.60, L.61, W.63, L.66, I.67 Chain Z: L.43 Ligands: 3PE.12, 3PE.16 Ligand excluded by PLIP 3PE.16: 20 residues within 4Å: Chain H: W.173, I.175, W.179, M.183 Chain I: L.62, T.64, E.65, R.68, G.71, L.74 Chain Z: R.28, G.29, L.30, M.35 Ligands: 3PE.12, 3PE.13, 3PE.46, CDL.59 Chain h: W.14, A.15 Ligand excluded by PLIP 3PE.18: 13 residues within 4Å: Chain J: K.23, A.92, T.95, G.96, M.99 Chain K: T.13, V.14, V.17, M.21, Y.22, R.23 Chain L: K.585 Ligands: 3PE.44 Ligand excluded by PLIP 3PE.19: 15 residues within 4Å: Chain L: T.166, Q.170, L.173, Y.174, G.228, M.533, H.534, P.538, N.541 Chain M: V.398, V.401, L.405 Chain b: N.115, R.116, D.118 Ligand excluded by PLIP 3PE.21: 18 residues within 4Å: Chain 8: I.80, Y.83, Y.84, H.88, K.92 Chain L: W.66, H.67, W.68, L.76, S.77, L.78, N.136, F.138 Chain M: P.371, L.449 Ligands: CDL.20, PC1.26, CDL.55 Ligand excluded by PLIP 3PE.22: 14 residues within 4Å: Chain 9: W.71, W.74, R.75 Chain L: F.44, P.91, V.92, F.95, F.334, I.459, F.463, Y.466, I.467 Chain e: F.77, L.78 Ligand excluded by PLIP 3PE.24: 15 residues within 4Å: Chain M: P.159, Y.166, S.191, F.194, M.195, L.197, A.198 Chain N: N.274, I.276, I.277, T.280 Chain Y: L.124, E.131, W.133 Ligands: 3PE.29 Ligand excluded by PLIP 3PE.25: 18 residues within 4Å: Chain M: W.16, T.90, L.94, M.98, F.105, V.127, I.131, R.135 Chain N: P.238, I.239, V.242, P.256, T.301, T.334, M.335 Chain O: K.326 Ligands: CDL.40, 3PE.49 Ligand excluded by PLIP 3PE.27: 13 residues within 4Å: Chain M: N.188, W.190, Y.210, G.211, L.212, F.256, M.257, P.260, L.264 Ligands: PC1.28, 3PE.57 Chain c: Y.102, K.106 Ligand excluded by PLIP 3PE.29: 25 residues within 4Å: Chain D: Q.46, Y.47, Y.53 Chain L: P.563, S.567, Q.570, M.571 Chain M: N.144, L.147, Y.148, F.151, Y.152, A.155, G.156, V.205, L.212 Chain N: W.167, F.281, I.284, T.285, L.287, Y.291, R.295 Ligands: 3PE.24, 3PE.45 Ligand excluded by PLIP 3PE.32: 12 residues within 4Å: Chain L: A.573, F.602, F.604 Chain N: N.152, T.156, L.160, W.167 Chain Y: A.2, K.3, L.6 Ligands: 3PE.41, 3PE.43 Ligand excluded by PLIP 3PE.35: 4 residues within 4Å: Chain 3: L.58 Chain O: K.338, W.339, W.341 Ligand excluded by PLIP 3PE.41: 22 residues within 4Å: Chain L: L.576, Q.580, T.594, S.598, L.601, F.602, F.604 Chain N: F.113, L.153, T.156, L.157, L.160 Chain Y: A.31, A.32, V.36, Y.39, S.40, L.43, K.44, Y.59 Ligands: 3PE.32, 3PE.42 Ligand excluded by PLIP 3PE.42: 13 residues within 4Å: Chain Y: Y.9, T.25, I.28, R.58, Y.59, A.63, G.67, F.70, L.101, T.105, M.118 Ligands: 3PE.41, 3PE.43 Ligand excluded by PLIP 3PE.43: 14 residues within 4Å: Chain N: I.277, F.281 Chain Y: L.6, R.7, W.10, I.28, L.124, V.125, G.128, Q.129, W.133, V.135 Ligands: 3PE.32, 3PE.42 Ligand excluded by PLIP 3PE.44: 10 residues within 4Å: Chain L: L.589 Chain Y: V.41, T.45, P.46, S.48, F.49, G.52, V.53, T.56 Ligands: 3PE.18 Ligand excluded by PLIP 3PE.45: 18 residues within 4Å: Chain L: I.561, T.565, I.566, L.568, A.569, Q.570 Chain Y: G.109, I.110, A.113, A.116, Y.117, L.120 Ligands: PC1.28, 3PE.29, 3PE.57 Chain c: Y.77, F.80, P.82 Ligand excluded by PLIP 3PE.46: 11 residues within 4Å: Chain H: L.176, W.179 Chain I: L.62 Chain Z: R.28, G.29, L.30, M.35, V.38, A.42 Ligands: 3PE.16 Chain h: W.14 Ligand excluded by PLIP 3PE.47: 7 residues within 4Å: Chain 1: V.30, P.33, T.34 Chain A: N.85, T.89, L.92, F.93 Ligand excluded by PLIP 3PE.48: 15 residues within 4Å: Chain 1: L.9, V.12, E.16, L.19, S.22, F.23, A.24, A.26, G.27 Chain A: A.99, A.103, W.106, T.107 Chain H: K.291, P.295 Ligand excluded by PLIP 3PE.49: 14 residues within 4Å: Chain 3: C.40, L.43, I.44, P.52, V.53, L.54 Chain M: W.16, T.97 Chain N: I.239, M.335 Chain O: K.326, Y.327 Ligands: 3PE.25, CDL.40 Ligand excluded by PLIP 3PE.50: 18 residues within 4Å: Chain 3: Q.12, F.13, L.14, V.71, Y.74, L.75 Chain 4: R.9 Chain N: L.203, M.261, L.332, M.336, L.339, M.342, L.343, V.345 Ligands: CDL.30, PC1.51, CDL.52 Ligand excluded by PLIP 3PE.53: 5 residues within 4Å: Chain 3: Y.39, L.54 Chain 5: R.8, W.11 Chain M: L.17 Ligand excluded by PLIP 3PE.54: 10 residues within 4Å: Chain 6: W.85, M.87, R.88, V.89, F.92, F.93 Chain 7: L.70, F.73, Y.74, L.77 Ligand excluded by PLIP 3PE.56: 9 residues within 4Å: Chain 7: V.82, G.85, I.89, I.93, W.110, I.117, R.119, W.120, R.123 Ligand excluded by PLIP 3PE.57: 17 residues within 4Å: Chain L: L.553, W.557, L.558 Chain M: Y.210 Chain Y: Y.108, G.109, A.112 Ligands: 3PE.27, 3PE.45 Chain c: P.82, N.83, T.84, S.87, G.90, A.91, G.94, I.95 Ligand excluded by PLIP

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)(Covalent)

SF4.3: 14 residues within 4Å: Chain B: A.90, C.91, C.92, G.127, T.128, G.154, S.155, C.156, G.185, C.186, P.187 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.91, B:C.92, B:C.156, B:C.186 SF4.7: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.8: 13 residues within 4Å: Chain D: I.379 Chain G: H.124, P.125, D.127, C.128, C.131, Q.133, G.134, C.137, L.139, Q.140, V.228, G.229 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.9: 14 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, P.227, V.228, A.230, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.14: 12 residues within 4Å: Chain I: H.101, C.123, P.124, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158 SF4.15: 13 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, C.119, I.130, Y.145, C.162, P.163, V.164, A.166, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.5: 9 residues within 4Å: Chain E: C.135, T.137, P.139, C.140, C.176, L.177, G.178, A.179, C.180 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.135, E:C.140, E:C.176, E:C.180 FES.10: 10 residues within 4Å: Chain G: R.62, F.63, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.6: 19 residues within 4Å: Chain F: G.87, R.88, G.89, A.91, K.98, N.116, D.118, E.119, G.120, Y.204, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 17 PLIP interactions: 17 interactions with chain F Hydrophobic interactions: F:Y.204, F:Y.204, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:G.89, F:N.116, F:E.119, F:G.120, F:G.207, F:E.209, F:N.244, F:N.244, F:T.247 Water bridges: F:K.98, F:G.207 Salt bridges: F:K.98

1 x K: POTASSIUM ION(Non-covalent)

K.11: 5 residues within 4Å: Chain G: Q.133, I.223, C.226, V.228, L.231 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:I.223, G:C.226, G:V.228, G:L.231

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.20: 26 residues within 4Å: Chain 7: L.68, R.72, I.75, G.79, V.82 Chain L: M.22, S.23, L.78, K.116, K.119, Y.120, L.123, T.127, I.130, G.146, M.150, L.153 Chain M: L.354, T.357, L.361, L.364, P.371, L.445, L.446 Ligands: 3PE.21, CDL.55 22 PLIP interactions: 3 interactions with chain 7, 5 interactions with chain M, 14 interactions with chain L Hydrophobic interactions: 7:I.75, 7:V.82, M:L.361, M:L.364, M:P.371, M:L.446, L:L.78, L:L.123, L:T.127, L:I.130, L:L.153 Salt bridges: 7:R.72, L:K.116, L:K.119, L:K.119, L:K.119, L:K.119 Hydrogen bonds: M:T.357, L:Y.120, L:Y.120 Water bridges: L:K.119, L:K.119 CDL.30: 24 residues within 4Å: Chain N: P.3, I.7, L.10, L.11, I.13, M.14, K.46, S.125, L.128, I.129, T.132, W.133, I.209, S.213, T.217, M.220, K.322, T.324, M.329 Chain O: P.28, H.280 Ligands: PC1.31, 3PE.50, PC1.51 15 PLIP interactions: 15 interactions with chain N Hydrophobic interactions: N:L.10, N:L.10, N:L.11, N:I.13, N:L.128, N:L.128, N:I.129, N:W.133, N:W.133, N:I.209, N:K.322 Hydrogen bonds: N:K.46, N:S.125, N:T.324 Salt bridges: N:K.46 CDL.40: 26 residues within 4Å: Chain 3: T.27, P.29, R.30, A.32, F.33, F.36 Chain 5: F.22, L.26 Chain M: L.2, I.5, I.6, I.9, L.55, F.105, M.108, I.120, L.121 Chain N: P.256, L.337, P.338 Chain X: F.169, W.170, T.171, M.172 Ligands: 3PE.25, 3PE.49 20 PLIP interactions: 2 interactions with chain N, 8 interactions with chain M, 2 interactions with chain 5, 4 interactions with chain 3, 4 interactions with chain X Hydrophobic interactions: N:P.256, N:L.337, M:L.2, M:I.5, M:I.6, M:I.9, M:L.55, M:F.105, M:I.120, M:L.121, 5:L.26, 3:A.32, 3:F.36, 3:F.36, 3:F.36, X:F.169 Water bridges: 5:N.30, X:T.171 Hydrogen bonds: X:T.171, X:T.171 CDL.52: 22 residues within 4Å: Chain 2: K.43, L.46, T.47, T.50 Chain 3: V.34, D.45, R.49, R.60, L.63, Y.64, S.67, F.70, V.71, G.72, L.75 Chain N: K.322, M.323, T.324, F.325, M.336, M.342 Ligands: 3PE.50 15 PLIP interactions: 11 interactions with chain 3, 2 interactions with chain 2, 2 interactions with chain N Hydrophobic interactions: 3:V.34, 3:Y.64, 3:Y.64, 3:F.70, 3:F.70, 3:V.71, 3:V.71, 3:L.75, 2:L.46 Hydrogen bonds: 3:R.49, 3:Y.64, N:M.323, N:F.325 Salt bridges: 3:R.60, 2:K.43 CDL.55: 20 residues within 4Å: Chain 6: T.104, A.107, Y.108 Chain 7: I.86, T.87, N.90, V.91, E.95, H.115 Chain 8: W.79, Y.83, H.88 Ligands: CDL.20, 3PE.21, PC1.26 Chain f: P.44, V.48, R.49, I.52, H.56 16 PLIP interactions: 2 interactions with chain 6, 6 interactions with chain 8, 3 interactions with chain f, 5 interactions with chain 7 Hydrophobic interactions: 6:A.107, 8:W.79, 8:W.79, 8:W.79, 8:Y.83, 8:Y.83, f:P.44, f:I.52, 7:I.86 Hydrogen bonds: 6:Y.108, 7:N.90, 7:N.90, 7:E.95 Salt bridges: 8:H.88, f:R.49, 7:H.115 CDL.59: 19 residues within 4Å: Chain 0: W.2, F.3, L.6, P.7 Chain H: Y.43 Chain I: F.78 Ligands: 3PE.16 Chain g: L.3, V.6, R.9, G.10, Q.13, Y.23 Chain h: S.3, A.4, T.5, F.7, I.8, L.11 10 PLIP interactions: 4 interactions with chain h, 1 interactions with chain I, 1 interactions with chain H, 2 interactions with chain g, 2 interactions with chain 0 Hydrophobic interactions: h:F.7, h:I.8, h:L.11, I:F.78, H:Y.43, 0:L.6, 0:P.7 Hydrogen bonds: h:T.5, g:R.9 Salt bridges: g:R.9

1 x CHD: CHOLIC ACID(Non-covalent)

CHD.23: 9 residues within 4Å: Chain 8: R.65, H.66, I.68, F.69 Chain L: Y.27, N.31, L.34, Y.35, T.38 10 PLIP interactions: 6 interactions with chain 8, 4 interactions with chain L Hydrophobic interactions: 8:R.65, 8:I.68, L:Y.27, L:N.31, L:Y.35, L:Y.35 Hydrogen bonds: 8:R.65, 8:R.65, 8:R.65 Salt bridges: 8:K.62

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.33: 20 residues within 4Å: Chain O: I.54, C.55, S.56, G.57, K.58, S.59, E.76, L.102, F.105, Y.106, Q.120, L.123, R.127, R.149, F.157, M.161, K.209, E.214, Y.221 Ligands: MG.34 20 PLIP interactions: 20 interactions with chain O Hydrogen bonds: O:C.55, O:S.56, O:G.57, O:K.58, O:S.59, O:Y.106, O:Y.106, O:Q.120, O:R.127, O:E.214, O:E.214, O:Y.221 Water bridges: O:S.59 Salt bridges: O:K.58, O:K.58, O:K.58, O:R.149, O:K.209 pi-Stacking: O:F.157, O:F.157

1 x MG: MAGNESIUM ION(Non-covalent)

MG.34: 3 residues within 4Å: Chain O: S.59, E.148 Ligands: GTP.33 No protein-ligand interaction detected (PLIP)

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.36: 26 residues within 4Å: Chain B: R.216 Chain P: G.60, A.61, T.62, G.63, F.64, L.65, R.85, C.86, W.108, L.129, V.130, G.131, R.132, F.139, V.144, F.145, I.167, S.168, H.169, Y.180, K.184, P.203, A.204, E.205, I.206 21 PLIP interactions: 20 interactions with chain P, 1 interactions with chain B Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:R.85, P:L.129, P:G.131, P:K.184, P:I.206 Water bridges: P:G.63, P:G.66, P:R.85, P:R.85 Salt bridges: P:R.85, P:R.132, P:R.132, B:R.216 pi-Cation interactions: P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.37: 5 residues within 4Å: Chain R: C.87, G.89, H.96, C.112, C.115 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.87, R:H.96, R:C.112, R:C.115

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.38: 22 residues within 4Å: Chain T: D.111, S.112, L.113 Chain W: M.25, K.29, V.32, L.35, W.39, L.52, I.54, G.59, K.62, V.63, M.66, F.67, N.70, A.71, I.73, V.79, L.82, F.106, F.107 17 PLIP interactions: 14 interactions with chain W, 3 interactions with chain T Hydrophobic interactions: W:V.32, W:L.35, W:W.39, W:L.52, W:I.54, W:K.62, W:V.63, W:M.66, W:F.67, W:F.67, W:F.106, W:F.107, T:L.113 Hydrogen bonds: W:N.70, W:N.70, T:D.111, T:S.112 EHZ.39: 21 residues within 4Å: Chain L: Y.513, H.514 Chain U: D.111, S.112 Chain d: H.12, Q.13, V.16, H.26, L.27, W.30, L.44, R.47, F.48, H.51, K.52, E.54, A.60, A.67, E.70, F.71, G.74 11 PLIP interactions: 10 interactions with chain d, 1 interactions with chain U Hydrophobic interactions: d:V.16, d:H.26, d:L.44, d:F.48, d:F.71 Hydrogen bonds: d:Q.13, d:R.47, d:H.51, d:K.52, d:K.52, U:S.112

1 x MYR: MYRISTIC ACID(Covalent)

MYR.58: 9 residues within 4Å: Chain L: L.409, L.413, I.414, L.486 Chain b: Y.153, Q.154 Chain e: G.2, H.4, L.5 5 PLIP interactions: 4 interactions with chain L, 1 interactions with chain b Hydrophobic interactions: L:L.409, L:L.413, L:I.414, L:L.486 Hydrogen bonds: b:Q.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, I. et al., Cryo-EM structures define ubiquinone-10 binding to mitochondrial complex I and conformational transitions accompanying Q-site occupancy. Nat Commun (2022)

Release Date

2022-05-25

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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