SMTL ID : 7qso.1

Bovine complex I in lipid nanodisc, State 3 (Slack)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

14 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.1: 10 residues within 4Å: Chain 1: V.30, T.34, T.39 Chain A: N.85, T.89, L.92, F.93, I.96, L.97 Ligands: 3PE.3 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain 1 Hydrophobic interactions: A:T.89, A:L.92, A:L.92, A:F.93, A:F.93, A:I.96, A:L.97, 1:V.30, 1:T.34 Hydrogen bonds: A:N.85, 1:T.34 3PE.2: 12 residues within 4Å: Chain 1: E.16, L.19, V.20, F.23, A.26 Chain A: I.96, A.99, L.102, W.106, T.107 Chain H: K.291, P.295 13 PLIP interactions: 6 interactions with chain 1, 5 interactions with chain A, 2 interactions with chain H Hydrophobic interactions: 1:L.19, 1:V.20, 1:F.23, 1:F.23, 1:F.23, A:I.96, A:L.102, A:W.106, A:W.106, A:T.107, H:P.295 Hydrogen bonds: 1:E.16 Salt bridges: H:K.291 3PE.3: 11 residues within 4Å: Chain A: N.83, T.86, M.90, F.93 Chain J: S.148, T.151, W.152, I.155, W.159 Chain N: L.15 Ligands: 3PE.1 7 PLIP interactions: 3 interactions with chain A, 3 interactions with chain J, 1 interactions with chain N Hydrophobic interactions: A:F.93, J:T.151, J:I.155, J:W.159, N:L.15 Hydrogen bonds: A:N.83, A:T.86 3PE.15: 10 residues within 4Å: Chain H: Q.169, E.170, W.173, G.244, T.245, S.246, N.258, K.262, L.265 Ligands: 3PE.46 7 PLIP interactions: 7 interactions with chain H Hydrophobic interactions: H:W.173, H:N.258, H:K.262 Hydrogen bonds: H:G.244, H:S.246 Salt bridges: H:K.262, H:K.262 3PE.16: 24 residues within 4Å: Chain 1: V.18, I.25 Chain D: R.266 Chain H: W.179, A.182, M.183, F.186, I.187, Y.277, F.280, L.288, N.292, F.293, L.296, W.303 Chain I: T.60, L.61, W.63, I.67, L.70 Chain Z: L.43, Y.47 Ligands: 3PE.19, 3PE.46 16 PLIP interactions: 8 interactions with chain H, 4 interactions with chain I, 1 interactions with chain Z, 1 interactions with chain 1, 2 interactions with chain D Hydrophobic interactions: H:W.179, H:F.186, H:F.186, H:I.187, H:Y.277, H:F.280, H:L.288, H:L.296, I:W.63, I:W.63, I:I.67, I:L.70, Z:L.43, 1:I.25 Salt bridges: D:R.266, D:R.266 3PE.19: 16 residues within 4Å: Chain H: M.183, W.272 Chain I: D.55, L.62, T.64, E.65, I.67, R.68 Chain Z: R.28, G.29, L.30, M.35 Ligands: 3PE.16, 3PE.46 Chain h: W.14, A.15 5 PLIP interactions: 2 interactions with chain I, 1 interactions with chain H, 1 interactions with chain Z, 1 interactions with chain h Hydrogen bonds: I:D.55, I:R.68 Hydrophobic interactions: H:W.272, h:W.14 Salt bridges: Z:R.28 3PE.21: 17 residues within 4Å: Chain L: D.163, T.166, Q.170, L.173, Y.174, I.177, G.228, L.229, M.533, H.534, A.537, P.538, N.541 Chain M: V.401, L.405 Chain b: N.115, R.116 14 PLIP interactions: 12 interactions with chain L, 2 interactions with chain M Hydrophobic interactions: L:L.173, L:Y.174, L:I.177, L:I.177, L:L.229, L:A.537, L:P.538, L:P.538, M:V.401, M:L.405 Hydrogen bonds: L:D.163, L:Q.170 Salt bridges: L:H.534, L:H.534 3PE.23: 10 residues within 4Å: Chain 8: I.80, Y.84, H.88, K.92 Chain L: N.65, W.66, H.67, L.78 Ligands: PC1.27, CDL.41 12 PLIP interactions: 5 interactions with chain L, 7 interactions with chain 8 Hydrophobic interactions: L:W.66, L:W.66, L:L.78, 8:I.80, 8:Y.84, 8:Y.84, 8:H.88 Hydrogen bonds: L:H.67, L:H.67 Salt bridges: 8:H.88, 8:K.92, 8:K.92 3PE.26: 11 residues within 4Å: Chain 3: F.36, Y.39, C.40, I.44, V.53, L.54 Chain M: P.13, W.16, T.90 Chain N: I.239 Ligands: 3PE.28 8 PLIP interactions: 4 interactions with chain 3, 4 interactions with chain M Hydrophobic interactions: 3:F.36, 3:F.36, 3:Y.39, 3:I.44, M:P.13, M:W.16 Hydrogen bonds: M:W.16, M:T.90 3PE.28: 12 residues within 4Å: Chain M: R.91, L.94, M.98, I.131, R.135 Chain N: W.234, P.238, I.239, V.242, L.243 Ligands: U10.25, 3PE.26 10 PLIP interactions: 4 interactions with chain N, 6 interactions with chain M Hydrophobic interactions: N:W.234, N:I.239, N:V.242, N:L.243, M:L.94, M:I.131, M:I.131, M:R.135 Hydrogen bonds: M:R.135 Salt bridges: M:R.91 3PE.29: 16 residues within 4Å: Chain 2: Y.57 Chain 3: Q.12, F.13, L.14, V.71, Y.74, L.75 Chain 4: R.9 Chain N: L.203, M.261, M.336, L.339, M.342, L.343 Ligands: PC1.39, CDL.40 11 PLIP interactions: 2 interactions with chain N, 7 interactions with chain 3, 1 interactions with chain 4, 1 interactions with chain 2 Hydrophobic interactions: N:L.203, N:M.342, 3:F.13, 3:Y.74, 3:Y.74, 3:L.75 Hydrogen bonds: 3:Q.12, 3:F.13, 3:L.14, 2:Y.57 Salt bridges: 4:R.9 3PE.38: 12 residues within 4Å: Chain M: A.163, Y.166, S.191, F.194, L.197, M.201 Chain N: N.274, I.276, I.277, T.280 Chain Y: G.132, W.133 7 PLIP interactions: 2 interactions with chain N, 3 interactions with chain M, 2 interactions with chain Y Hydrophobic interactions: N:T.280, M:Y.166, M:F.194, M:L.197 Hydrogen bonds: N:N.274, Y:G.132, Y:G.132 3PE.42: 9 residues within 4Å: Chain 7: I.89, I.93, W.110, P.116, I.117, R.119, W.120, R.123 Chain f: Y.61 8 PLIP interactions: 8 interactions with chain 7 Hydrophobic interactions: 7:I.89, 7:I.93, 7:P.116, 7:I.117, 7:W.120 Salt bridges: 7:R.119, 7:R.123, 7:R.123 3PE.46: 13 residues within 4Å: Chain H: S.269, W.272 Chain I: I.67, L.70 Chain Z: R.28, G.29, L.30 Ligands: 3PE.15, 3PE.16, 3PE.19 Chain h: W.10, L.11, W.14 8 PLIP interactions: 3 interactions with chain h, 2 interactions with chain Z, 1 interactions with chain H, 2 interactions with chain I Hydrophobic interactions: h:W.10, h:L.11, h:W.14, H:W.272, I:I.67, I:L.70 Hydrogen bonds: Z:L.30 Salt bridges: Z:R.28

6 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.4: 16 residues within 4Å: Chain A: I.20, N.28, V.29, Y.30 Chain B: I.74, R.78, R.209, L.210, W.213, R.216 Chain H: F.56, I.57 Chain P: D.90, F.310, E.311 Ligands: PC1.6 12 PLIP interactions: 3 interactions with chain P, 4 interactions with chain B, 2 interactions with chain A, 3 interactions with chain H Hydrophobic interactions: P:F.310, B:I.74, A:I.20, H:F.56, H:F.56, H:I.57 Hydrogen bonds: P:E.311, A:N.28 Salt bridges: P:D.90, B:R.78, B:R.209, B:R.216 PC1.6: 16 residues within 4Å: Chain B: K.69, D.72, L.73, W.76, R.79, K.205 Chain H: L.46, I.49, I.53 Ligands: PC1.4, PC1.44 Chain g: F.28, R.29, N.31, W.75, D.76 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain H Hydrophobic interactions: B:K.69, B:L.73, B:W.76, B:W.76, H:I.49 Salt bridges: B:R.79, B:R.79, B:K.205, B:K.205 PC1.20: 24 residues within 4Å: Chain 0: A.39, H.40 Chain A: M.1, L.3, M.4, L.7 Chain H: M.98, N.99, L.100, F.104, M.108 Chain J: I.34, G.38, G.42, L.45, N.46, S.50, L.54, F.57 Chain Z: F.140, I.141, W.142, Y.143, T.144 9 PLIP interactions: 2 interactions with chain H, 1 interactions with chain A, 5 interactions with chain J, 1 interactions with chain Z Hydrogen bonds: H:N.99, H:L.100, J:S.50 Hydrophobic interactions: A:L.7, J:I.34, J:L.45, J:F.57, J:F.57 pi-Cation interactions: Z:F.140 PC1.27: 18 residues within 4Å: Chain 6: V.98, S.103, A.107, Y.108 Chain L: W.66 Chain M: L.39, I.67, L.68, W.71, I.317, L.321, P.443, L.446, L.449, N.450, K.452 Ligands: 3PE.23, CDL.41 11 PLIP interactions: 11 interactions with chain M Hydrophobic interactions: M:L.39, M:I.67, M:L.68, M:W.71, M:I.317, M:L.321, M:P.443, M:L.446, M:N.450 Hydrogen bonds: M:N.450 Salt bridges: M:K.452 PC1.39: 15 residues within 4Å: Chain 3: R.8, T.10, F.11, Q.12, F.13, R.78 Chain 4: F.3, F.4 Chain N: L.136, Y.143, I.206, V.345, L.346, E.347 Ligands: 3PE.29 12 PLIP interactions: 2 interactions with chain N, 7 interactions with chain 3, 3 interactions with chain 4 Hydrophobic interactions: N:L.136, N:I.206, 3:F.11, 3:F.13, 4:F.3, 4:F.4 Hydrogen bonds: 3:F.11, 3:Q.12 Salt bridges: 3:R.8, 3:R.78, 3:R.78 pi-Cation interactions: 4:F.3 PC1.44: 5 residues within 4Å: Chain H: P.42 Ligands: PC1.6 Chain g: F.28, F.74, W.75 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain g Hydrophobic interactions: H:P.42, g:F.28 pi-Cation interactions: g:F.74

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.5: 12 residues within 4Å: Chain B: A.90, C.91, C.92, G.127, G.154, S.155, C.156, C.186, P.187 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.91, B:C.92, B:C.156, B:C.186 SF4.9: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.10: 11 residues within 4Å: Chain G: H.124, D.127, C.128, C.131, Q.133, G.134, C.137, L.139, Q.140, V.228, G.229 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:D.127 Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.11: 14 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, P.227, V.228, A.230, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.17: 12 residues within 4Å: Chain I: H.101, C.123, P.124, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158 SF4.18: 14 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, Y.145, C.162, P.163, V.164, A.166, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.7: 9 residues within 4Å: Chain E: C.135, T.137, P.139, C.140, C.176, L.177, G.178, A.179, C.180 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.135, E:C.140, E:C.176, E:C.180 FES.12: 9 residues within 4Å: Chain G: R.62, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.8: 18 residues within 4Å: Chain F: G.87, R.88, G.89, K.98, N.116, D.118, E.119, G.120, Y.204, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 17 PLIP interactions: 17 interactions with chain F Hydrophobic interactions: F:Y.204, F:Y.204, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:R.88, F:G.89, F:N.116, F:E.119, F:G.120, F:G.207, F:E.209, F:V.242, F:N.244, F:N.244, F:T.247 Salt bridges: F:K.98

1 x K: POTASSIUM ION(Non-covalent)

K.13: 5 residues within 4Å: Chain G: Q.133, I.223, C.226, V.228, L.231 4 PLIP interactions: 4 interactions with chain G Metal complexes: G:I.223, G:C.226, G:V.228, G:L.231

2 x CHD: CHOLIC ACID(Non-covalent)

CHD.14: 13 residues within 4Å: Chain B: W.83, V.112, R.114 Chain H: A.18, T.21, R.25, P.48, D.51, A.52, L.55, A.221, F.224, M.225 12 PLIP interactions: 8 interactions with chain H, 4 interactions with chain B Hydrophobic interactions: H:T.21, H:D.51, H:A.52, H:A.221, H:F.224, H:F.224, H:F.224, B:W.83, B:W.83, B:V.112 Hydrogen bonds: H:R.25, B:R.114 CHD.24: 9 residues within 4Å: Chain 8: E.43, R.65, I.68, F.69 Chain L: Y.27, K.28, L.34, Y.35, T.38 8 PLIP interactions: 3 interactions with chain 8, 5 interactions with chain L Hydrophobic interactions: 8:R.65, 8:I.68, 8:F.69, L:Y.27, L:Y.27, L:K.28 Hydrogen bonds: L:T.38, L:T.38

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.22: 24 residues within 4Å: Chain 6: V.100 Chain 7: L.68, L.71, R.72, I.75, G.79, V.82, I.86 Chain L: M.22, S.23, K.116, K.119, Y.120, L.123, T.127, G.146, M.150, L.153 Chain M: T.357, L.360, P.371, L.442, L.445 Ligands: CDL.41 20 PLIP interactions: 5 interactions with chain 7, 10 interactions with chain L, 4 interactions with chain M, 1 interactions with chain 6 Hydrophobic interactions: 7:L.71, 7:I.75, 7:V.82, 7:I.86, L:T.127, L:L.153, M:L.360, M:P.371, M:L.442, M:L.445, 6:V.100 Salt bridges: 7:R.72, L:K.116, L:K.119, L:K.119, L:K.119, L:K.119, L:K.119 Hydrogen bonds: L:Y.120, L:Y.120 CDL.30: 20 residues within 4Å: Chain N: P.3, F.6, I.7, M.14, K.46, S.125, L.128, I.129, T.132, W.133, L.136, I.209, S.213, T.217, M.220, M.323, T.324, M.329 Chain O: P.28, I.32 11 PLIP interactions: 11 interactions with chain N Hydrophobic interactions: N:L.128, N:W.133, N:W.133, N:L.136, N:I.209 Hydrogen bonds: N:K.46, N:S.125, N:M.323, N:T.324, N:T.324 Salt bridges: N:K.46 CDL.37: 20 residues within 4Å: Chain 3: T.27, P.29, R.30, F.33 Chain 5: Y.25, L.26, K.29, K.33 Chain M: L.2, I.9, L.55, F.56, M.108, I.120 Chain N: P.256, P.338 Chain X: F.169, W.170, T.171, M.172 15 PLIP interactions: 4 interactions with chain 5, 2 interactions with chain N, 4 interactions with chain M, 3 interactions with chain X, 2 interactions with chain 3 Hydrophobic interactions: 5:Y.25, 5:Y.25, 5:L.26, N:P.256, N:P.338, M:L.2, M:I.9, M:F.56, M:I.120, X:F.169, 3:F.33, 3:F.33 Salt bridges: 5:K.33 Hydrogen bonds: X:T.171, X:T.171 CDL.40: 19 residues within 4Å: Chain 2: K.43, T.47, T.50, L.54 Chain 3: D.45, R.49, R.60, L.63, Y.64, S.67, F.68, F.70, V.71, L.75 Chain N: T.324, F.325, T.328, M.342 Ligands: 3PE.29 14 PLIP interactions: 9 interactions with chain 3, 2 interactions with chain N, 3 interactions with chain 2 Hydrophobic interactions: 3:Y.64, 3:Y.64, 3:F.68, 3:F.68, 3:F.70, 3:L.75, N:F.325, 2:L.54 Hydrogen bonds: 3:Y.64, N:F.325 Salt bridges: 3:R.49, 3:R.60, 2:K.43, 2:K.43 CDL.41: 22 residues within 4Å: Chain 6: S.103, Y.108 Chain 7: T.87, N.90, V.91, E.95, H.115 Chain 8: W.79, I.80, Y.83, Y.84, H.88 Chain L: L.12 Chain M: L.446 Ligands: CDL.22, 3PE.23, PC1.27 Chain f: P.44, V.48, R.49, I.52, H.56 17 PLIP interactions: 1 interactions with chain L, 7 interactions with chain 8, 4 interactions with chain f, 1 interactions with chain M, 3 interactions with chain 7, 1 interactions with chain 6 Hydrophobic interactions: L:L.12, 8:W.79, 8:I.80, 8:Y.83, 8:Y.83, 8:Y.83, 8:Y.84, f:V.48, f:V.48, f:I.52, M:L.446 Salt bridges: 8:H.88, f:R.49, 7:H.115 Hydrogen bonds: 7:N.90, 7:N.90, 6:Y.108 CDL.45: 18 residues within 4Å: Chain 0: M.1, W.2, F.3, L.6, P.7, A.10 Chain H: Y.43 Chain g: L.3, V.6, R.9, G.10, Q.13, Y.23 Chain h: S.3, A.4, T.5, F.7, I.8 11 PLIP interactions: 3 interactions with chain h, 3 interactions with chain g, 4 interactions with chain 0, 1 interactions with chain H Hydrophobic interactions: h:F.7, h:I.8, g:V.6, 0:F.3, 0:L.6, 0:L.6, 0:A.10, H:Y.43 Hydrogen bonds: h:T.5, g:R.9 Salt bridges: g:R.9

1 x U10: UBIQUINONE-10(Non-covalent)

U10.25: 38 residues within 4Å: Chain M: Y.119, E.123, L.126, V.127, L.130, I.131, I.133, T.134, Y.148, F.149, Y.152, T.153, S.157, L.158, L.161, K.206, W.215, A.219, E.222 Chain N: W.189, V.242, A.246, L.249, G.253, L.254, P.255, F.260, K.263, I.267, A.283, A.286, L.287, M.294, T.297, Y.298, T.301, L.302 Ligands: 3PE.28 25 PLIP interactions: 12 interactions with chain M, 13 interactions with chain N Hydrophobic interactions: M:L.126, M:L.130, M:L.130, M:I.133, M:F.149, M:F.149, M:Y.152, M:T.153, M:L.161, M:A.219, N:W.189, N:A.246, N:L.249, N:L.254, N:L.254, N:F.260, N:K.263, N:K.263, N:I.267, N:A.283, N:A.286, N:Y.298, N:L.302 pi-Stacking: M:F.149, M:W.215

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.31: 20 residues within 4Å: Chain O: N.53, I.54, C.55, S.56, G.57, K.58, S.59, E.76, L.102, F.105, Y.106, Q.120, L.123, R.127, R.149, D.154, F.157, K.209, E.214 Ligands: MG.32 16 PLIP interactions: 16 interactions with chain O Hydrogen bonds: O:C.55, O:S.56, O:G.57, O:K.58, O:S.59, O:Q.120, O:R.127, O:E.214, O:E.214 Salt bridges: O:K.58, O:K.58, O:R.149, O:K.209 pi-Stacking: O:F.157, O:F.157 pi-Cation interactions: O:F.105

1 x MG: MAGNESIUM ION(Non-covalent)

MG.32: 2 residues within 4Å: Chain O: S.59 Ligands: GTP.31 1 PLIP interactions: 1 interactions with chain O Metal complexes: O:S.59

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.33: 23 residues within 4Å: Chain B: R.216 Chain P: G.60, T.62, G.63, F.64, L.65, R.85, C.86, W.108, L.129, V.130, G.131, R.132, F.139, V.144, F.145, I.167, S.168, H.169, Y.180, K.184, A.204, I.206 20 PLIP interactions: 19 interactions with chain P, 1 interactions with chain B Hydrophobic interactions: P:I.206, P:I.206 Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:C.86, P:L.129, P:G.131, P:K.184, P:I.206 Salt bridges: P:R.85, P:R.132, P:R.132, B:R.216 pi-Cation interactions: P:R.85, P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.34: 5 residues within 4Å: Chain R: C.87, G.89, H.96, C.112, C.115 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.87, R:H.96, R:C.112, R:C.115

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.35: 18 residues within 4Å: Chain T: S.112, L.113 Chain W: K.29, V.32, L.35, W.39, I.54, G.59, V.63, M.66, F.67, N.70, A.71, I.73, V.79, L.82, V.83, F.106 16 PLIP interactions: 15 interactions with chain W, 1 interactions with chain T Hydrophobic interactions: W:K.29, W:V.32, W:L.35, W:W.39, W:W.39, W:I.54, W:V.63, W:M.66, W:F.67, W:F.67, W:F.106, T:L.113 Hydrogen bonds: W:N.70, W:N.70, W:A.71 Salt bridges: W:K.29 EHZ.36: 22 residues within 4Å: Chain L: Y.513, H.514 Chain U: D.111, S.112 Chain d: H.12, Q.13, V.16, L.17, A.23, H.26, L.27, W.30, R.47, F.48, H.51, K.52, E.54, A.60, L.63, A.67, E.70, G.74 9 PLIP interactions: 7 interactions with chain d, 2 interactions with chain U Hydrophobic interactions: d:V.16, d:A.23, d:H.26, d:K.52 Hydrogen bonds: d:R.47, d:H.51, d:K.52, U:D.111, U:S.112

1 x MYR: MYRISTIC ACID(Covalent)

MYR.43: 3 residues within 4Å: Chain L: Y.485 Chain e: G.2, A.3 2 PLIP interactions: 1 interactions with chain L, 1 interactions with chain e Hydrophobic interactions: L:Y.485, e:A.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chung, I. et al., Cryo-EM structures define ubiquinone-10 binding to mitochondrial complex I and conformational transitions accompanying Q-site occupancy. Nat Commun (2022)

Release Date

2022-05-25

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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