SMTL ID : 7r4g.1

Bovine complex I in the presence of IM1761092, slack class ii (Composite map)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

10 x 3PE: 1,2-Distearoyl-sn-glycerophosphoethanolamine(Non-covalent)

3PE.1: 17 residues within 4Å: Chain 1: L.9, E.16, L.19, V.20, S.22, F.23, A.24, A.26 Chain A: A.99, L.102, W.106, T.107, K.109 Chain H: K.291, P.295, L.298, A.299 16 PLIP interactions: 9 interactions with chain 1, 3 interactions with chain H, 4 interactions with chain A Hydrophobic interactions: 1:L.9, 1:L.19, 1:L.19, 1:L.19, 1:V.20, 1:V.20, 1:F.23, 1:F.23, 1:A.26, H:L.298, H:A.299, A:L.102, A:W.106, A:T.107 Salt bridges: H:K.291, A:K.109 3PE.2: 19 residues within 4Å: Chain A: M.1, L.3, M.4, L.7, F.11 Chain H: L.73, M.77, M.98, N.99, L.100, F.104, M.108 Chain J: L.45, N.46, S.50, L.54, F.57 Chain Z: I.141, W.142 14 PLIP interactions: 5 interactions with chain A, 6 interactions with chain H, 3 interactions with chain J Hydrophobic interactions: A:L.3, A:L.7, A:L.7, A:F.11, A:F.11, H:L.73, H:F.104, H:F.104, J:F.57, J:F.57 Hydrogen bonds: H:N.99, H:N.99, H:L.100, J:S.50 3PE.13: 15 residues within 4Å: Chain H: Q.169, E.170, W.173, F.186, L.243, G.244, T.245, S.246, N.258, K.262, L.265, L.266, S.269 Chain I: L.70 Ligands: 3PE.15 10 PLIP interactions: 9 interactions with chain H, 1 interactions with chain I Hydrophobic interactions: H:F.186, H:L.243, H:K.262, H:L.265, H:L.266, I:L.70 Hydrogen bonds: H:Q.169, H:S.246 Salt bridges: H:K.262, H:K.262 3PE.15: 27 residues within 4Å: Chain 1: V.18, I.25, L.28 Chain D: R.266 Chain H: W.179, A.182, M.183, M.184, F.186, I.187, T.238, Y.277, L.288, N.292, F.293, L.296, W.303 Chain I: T.60, L.61, W.63, L.66, I.67, L.70 Chain Z: I.40, L.43, L.44 Ligands: 3PE.13 21 PLIP interactions: 2 interactions with chain D, 9 interactions with chain H, 3 interactions with chain Z, 2 interactions with chain 1, 5 interactions with chain I Salt bridges: D:R.266, D:R.266 Hydrophobic interactions: H:W.179, H:A.182, H:F.186, H:I.187, H:T.238, H:Y.277, H:L.296, H:W.303, Z:I.40, Z:L.43, Z:L.44, 1:I.25, 1:L.28, I:W.63, I:W.63, I:W.63, I:I.67, I:L.70 Hydrogen bonds: H:N.292 3PE.18: 13 residues within 4Å: Chain H: M.183, W.272 Chain I: T.64, E.65, I.67, R.68, G.71 Chain Z: R.28, G.29, L.30, M.35 Chain h: W.14, A.15 9 PLIP interactions: 2 interactions with chain Z, 1 interactions with chain h, 5 interactions with chain I, 1 interactions with chain H Hydrogen bonds: Z:R.28 Salt bridges: Z:R.28, I:R.68 Hydrophobic interactions: h:W.14, I:T.64, I:I.67, I:I.67, I:I.67, H:W.272 3PE.21: 15 residues within 4Å: Chain L: D.163, T.166, Q.170, L.173, Y.174, I.180, L.229, H.534, A.537, P.538, N.541 Chain M: V.401, L.405 Chain b: N.115, R.116 14 PLIP interactions: 12 interactions with chain L, 2 interactions with chain M Hydrophobic interactions: L:L.173, L:Y.174, L:Y.174, L:I.180, L:A.537, L:P.538, L:P.538, M:V.401, M:L.405 Hydrogen bonds: L:D.163, L:Q.170 Water bridges: L:D.163 Salt bridges: L:H.534, L:H.534 3PE.23: 17 residues within 4Å: Chain 8: I.80, Y.84, H.88, K.92 Chain L: W.66, H.67, W.68, S.77, L.78, F.138, I.142 Chain M: P.371, T.448, L.449 Ligands: CDL.22, PC1.26, CDL.42 15 PLIP interactions: 8 interactions with chain L, 4 interactions with chain 8, 3 interactions with chain M Hydrophobic interactions: L:W.66, L:W.66, L:W.68, L:W.68, L:L.78, L:F.138, L:I.142, 8:I.80, 8:Y.84, M:P.371, M:T.448, M:L.449 Hydrogen bonds: L:H.67 Salt bridges: 8:H.88, 8:K.92 3PE.25: 13 residues within 4Å: Chain M: A.155, Y.166, S.191, F.194, M.195, L.197, A.198, M.201 Chain N: N.274, I.276, T.280, F.281 Chain Y: W.133 12 PLIP interactions: 7 interactions with chain M, 3 interactions with chain Y, 2 interactions with chain N Hydrophobic interactions: M:A.155, M:Y.166, M:F.194, M:M.195, M:L.197, M:A.198, Y:W.133, Y:W.133, Y:W.133, N:F.281 Water bridges: M:Y.166 Hydrogen bonds: N:N.274 3PE.27: 15 residues within 4Å: Chain M: T.90, R.91, L.94, M.98, S.101, I.131, R.135 Chain N: W.234, V.242, L.243, P.256, L.257, T.334, M.335 Ligands: 3PE.32 7 PLIP interactions: 3 interactions with chain M, 4 interactions with chain N Hydrophobic interactions: M:R.91, M:L.94, M:I.131, N:W.234, N:L.243, N:L.257, N:M.335 3PE.32: 16 residues within 4Å: Chain 3: F.36, C.40, L.43, A.47, V.53, L.54 Chain M: I.9, P.13, W.16, T.90, T.97, S.101 Chain N: I.239 Chain O: K.326, Y.327 Ligands: 3PE.27 13 PLIP interactions: 8 interactions with chain 3, 4 interactions with chain M, 1 interactions with chain N Hydrophobic interactions: 3:F.36, 3:F.36, 3:L.43, 3:A.47, 3:V.53, 3:V.53, 3:L.54, M:I.9, M:P.13, M:W.16, M:T.97, N:I.239 Hydrogen bonds: 3:V.53

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.3: 13 residues within 4Å: Chain B: A.90, C.91, C.92, G.127, T.128, G.154, S.155, C.156, C.186, P.187 Chain D: R.118, R.138, H.223 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.91, B:C.92, B:C.156, B:C.186 SF4.7: 13 residues within 4Å: Chain F: I.205, P.223, S.378, C.379, G.380, Q.381, C.382, C.385, T.423, I.424, C.425, L.427, G.428 4 PLIP interactions: 4 interactions with chain F, Metal complexes: F:C.379, F:C.382, F:C.385, F:C.425 SF4.8: 12 residues within 4Å: Chain G: H.124, P.125, D.127, C.128, C.131, Q.133, G.134, C.137, L.139, Q.140, V.228, G.229 5 PLIP interactions: 5 interactions with chain G, Salt bridges: G:D.127 Metal complexes: G:H.124, G:C.128, G:C.131, G:C.137 SF4.9: 14 residues within 4Å: Chain G: M.173, C.176, I.177, Q.178, C.179, T.180, R.181, C.182, V.206, C.226, P.227, V.228, A.230, L.231 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.176, G:C.179, G:C.182, G:C.226 SF4.16: 12 residues within 4Å: Chain I: H.101, C.123, P.124, I.128, C.152, I.153, Y.154, C.155, G.156, F.157, C.158, E.169 5 PLIP interactions: 5 interactions with chain I, Salt bridges: I:E.169 Metal complexes: I:C.123, I:C.152, I:C.155, I:C.158 SF4.17: 14 residues within 4Å: Chain I: C.113, I.114, A.115, C.116, K.117, L.118, C.119, I.130, Y.145, C.162, P.163, V.164, A.166, I.167 4 PLIP interactions: 4 interactions with chain I, Metal complexes: I:C.113, I:C.116, I:C.119, I:C.162

2 x PC1: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE(Non-covalent)

PC1.4: 12 residues within 4Å: Chain B: D.72, L.73, W.76, R.79, K.205 Chain H: L.46 Chain I: F.88 Chain g: F.28, R.29, N.31, W.75, V.77 9 PLIP interactions: 8 interactions with chain B, 1 interactions with chain H Hydrophobic interactions: B:L.73, B:W.76, B:W.76, B:W.76, H:L.46 Salt bridges: B:R.79, B:R.79, B:K.205, B:K.205 PC1.26: 17 residues within 4Å: Chain 6: L.99, S.103, V.106, A.107, Y.108 Chain L: W.66 Chain M: I.67, L.68, W.71, I.317, P.443, L.446, L.447, L.449, N.450 Ligands: 3PE.23, CDL.42 10 PLIP interactions: 7 interactions with chain M, 3 interactions with chain 6 Hydrophobic interactions: M:W.71, M:W.71, M:I.317, M:P.443, M:L.446, M:L.447, 6:L.99, 6:V.106, 6:A.107 Hydrogen bonds: M:N.450

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.5: 10 residues within 4Å: Chain E: C.135, T.137, P.139, C.140, C.176, L.177, G.178, A.179, C.180, M.185 4 PLIP interactions: 4 interactions with chain E, Metal complexes: E:C.135, E:C.140, E:C.176, E:C.180 FES.10: 10 residues within 4Å: Chain G: R.62, F.63, C.64, Y.65, G.73, N.74, C.75, R.76, C.78, C.92 4 PLIP interactions: 4 interactions with chain G, Metal complexes: G:C.64, G:C.75, G:C.78, G:C.92

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.6: 18 residues within 4Å: Chain F: G.87, R.88, G.89, K.98, N.116, D.118, E.119, G.120, Y.204, G.207, E.208, E.209, V.242, A.243, N.244, T.247, A.426, L.427 19 PLIP interactions: 19 interactions with chain F Hydrophobic interactions: F:Y.204, F:Y.204, F:E.208, F:A.426, F:L.427 Hydrogen bonds: F:G.89, F:N.116, F:E.119, F:G.120, F:G.207, F:E.209, F:N.244, F:N.244, F:T.247, F:T.247 Water bridges: F:K.98, F:K.98, F:G.207 Salt bridges: F:K.98

1 x K: POTASSIUM ION(Non-covalent)

K.11: 5 residues within 4Å: Chain G: Q.133, I.223, C.226, V.228, L.231 3 PLIP interactions: 3 interactions with chain G Metal complexes: G:I.223, G:V.228, G:L.231

10 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)

LMT.12: 11 residues within 4Å: Chain B: I.74, R.78, E.146, R.209 Chain H: I.53, I.57, K.58, E.59, R.62 Chain P: Y.89, D.90 11 PLIP interactions: 6 interactions with chain B, 4 interactions with chain H, 1 interactions with chain P Hydrophobic interactions: B:I.74, B:I.74, H:I.53 Hydrogen bonds: B:R.78, B:R.209, B:R.209, H:E.59, H:E.59, H:R.62, P:D.90 Salt bridges: B:R.78 LMT.19: 9 residues within 4Å: Chain 4: D.13, L.14 Chain A: N.83, T.86 Chain J: Y.149, W.152, I.155, W.159 Chain N: L.15 6 PLIP interactions: 3 interactions with chain J, 1 interactions with chain A, 1 interactions with chain 4, 1 interactions with chain N Hydrophobic interactions: J:I.155, J:W.159, 4:L.14, N:L.15 Hydrogen bonds: J:Y.149, A:N.83 LMT.20: 13 residues within 4Å: Chain K: L.19, L.20, R.23, V.90, Q.91, L.93, N.94 Chain N: K.58, L.61, T.65, M.104, F.111, E.117 8 PLIP interactions: 3 interactions with chain K, 5 interactions with chain N Hydrophobic interactions: K:L.20, N:L.61, N:F.111 Hydrogen bonds: K:Q.91, K:N.94, N:K.58, N:E.117 Salt bridges: N:K.58 LMT.24: 14 residues within 4Å: Chain 8: F.69, T.72, H.73, I.80 Chain L: L.13, M.17, M.21, N.25, T.26, Y.27, K.28, N.31, L.34, Y.35 7 PLIP interactions: 4 interactions with chain L, 3 interactions with chain 8 Hydrophobic interactions: L:L.13, 8:T.72, 8:I.80 Hydrogen bonds: L:N.25, L:T.26, L:K.28 Salt bridges: 8:H.73 LMT.29: 9 residues within 4Å: Chain K: C.98 Chain N: P.110, H.112, F.113, I.164, W.167, G.168, Q.172, Y.181 5 PLIP interactions: 5 interactions with chain N Hydrophobic interactions: N:P.110, N:I.164 Hydrogen bonds: N:Q.172, N:Y.181 Salt bridges: N:H.112 LMT.40: 12 residues within 4Å: Chain 1: V.30, P.33, T.34, T.39, L.43 Chain A: L.84, N.85, L.88, T.89, L.92, F.93, I.96 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.92, A:F.93 LMT.41: 10 residues within 4Å: Chain 5: H.10, H.13, P.17 Chain 6: A.81, V.82, W.85, F.93 Chain M: M.22, H.30, L.33 3 PLIP interactions: 1 interactions with chain 6, 1 interactions with chain M, 1 interactions with chain 5 Hydrophobic interactions: 6:F.93, M:L.33, 5:P.17 LMT.43: 10 residues within 4Å: Chain 5: Y.24, R.28 Chain 6: F.105 Chain 7: W.110, R.123, T.124, F.125 Chain M: F.36, L.39, L.40 8 PLIP interactions: 4 interactions with chain M, 2 interactions with chain 5, 1 interactions with chain 7, 1 interactions with chain 6 Hydrophobic interactions: M:F.36, M:F.36, M:L.39, M:L.40, 6:F.105 Hydrogen bonds: 5:Y.24, 5:R.28, 7:E.108 LMT.44: 8 residues within 4Å: Chain L: L.286, M.411 Chain b: L.128, K.131, H.132, G.135, F.136, F.139 7 PLIP interactions: 6 interactions with chain b, 1 interactions with chain L Hydrophobic interactions: b:F.139, b:F.139, L:L.286 Hydrogen bonds: b:K.131, b:K.131 Salt bridges: b:K.131, b:H.132 LMT.46: 10 residues within 4Å: Chain 7: V.82, I.86, I.89, W.110, P.116, R.119, W.120 Chain f: N.59, K.60, Y.61 9 PLIP interactions: 8 interactions with chain 7, 1 interactions with chain f Hydrophobic interactions: 7:V.82, 7:I.86, 7:I.89, 7:P.116, 7:W.120, 7:W.120 Hydrogen bonds: 7:R.119, 7:R.119, f:N.59

2 x I49: 1-carbamimidoyl-3-[2-(3-chloranyl-4-iodanyl-phenyl)ethyl]guanidine(Non-covalent)

I49.14: 10 residues within 4Å: Chain B: W.83, V.112, R.114 Chain H: A.18, T.21, P.48, D.51, L.55, F.224, M.225 7 PLIP interactions: 3 interactions with chain B, 4 interactions with chain H Hydrophobic interactions: B:W.83, H:T.21, H:D.51, H:L.55, H:F.224 Hydrogen bonds: B:R.114 pi-Cation interactions: B:W.83 I49.31: 10 residues within 4Å: Chain 3: M.82, R.86 Chain 7: R.157, W.168, F.169 Chain N: Y.196, N.197, P.198, E.347 Chain Y: V.141 7 PLIP interactions: 2 interactions with chain 7, 3 interactions with chain N, 1 interactions with chain 3, 1 interactions with chain Y Hydrophobic interactions: 7:W.168, 7:W.168, 3:R.86 Hydrogen bonds: N:Y.196, N:T.199, Y:V.141 Salt bridges: N:E.347

6 x CDL: CARDIOLIPIN(Non-covalent)

CDL.22: 22 residues within 4Å: Chain 6: L.99 Chain 7: K.65, L.68, R.72 Chain L: M.22, F.24, K.116, K.119, Y.120, L.123, T.127, I.130, M.150, L.153 Chain M: L.354, T.357, L.364, L.442, L.445, L.446 Ligands: 3PE.23, CDL.42 14 PLIP interactions: 3 interactions with chain 7, 5 interactions with chain M, 6 interactions with chain L Hydrophobic interactions: 7:L.68, M:L.364, M:L.442, M:L.445, M:L.446, L:T.127, L:I.130 Salt bridges: 7:K.65, 7:R.72, L:K.119, L:K.119, L:K.119 Hydrogen bonds: M:T.357, L:Y.120 CDL.28: 19 residues within 4Å: Chain N: P.3, F.6, I.7, K.46, S.125, L.128, I.129, T.132, W.133, L.136, I.209, I.210, T.217, M.220, K.322, M.323, T.324, M.329 Chain O: P.28 12 PLIP interactions: 12 interactions with chain N Hydrophobic interactions: N:I.7, N:L.128, N:I.129, N:W.133, N:W.133, N:L.136, N:I.209, N:I.210 Hydrogen bonds: N:S.125, N:M.323 Salt bridges: N:K.46, N:K.322 CDL.30: 23 residues within 4Å: Chain 2: K.43, L.46, T.47, T.50 Chain 3: V.34, D.45, R.49, R.60, L.63, Y.64, S.67, F.68, F.70, V.71, G.72, L.75 Chain N: M.323, T.324, F.325, L.326, T.328, L.332, M.342 17 PLIP interactions: 2 interactions with chain 2, 10 interactions with chain 3, 5 interactions with chain N Hydrophobic interactions: 2:L.46, 3:V.34, 3:L.63, 3:Y.64, 3:F.68, 3:F.70, 3:L.75, N:F.325, N:T.328, N:L.332 Salt bridges: 2:K.43, 3:R.49, 3:R.60 Hydrogen bonds: 3:D.45, 3:Y.64, N:F.325, N:L.326 CDL.39: 16 residues within 4Å: Chain 3: T.27, P.29, R.30, A.32, F.33 Chain 5: L.26, K.29, N.30 Chain M: L.2, L.55, I.120 Chain N: P.338 Chain X: F.169, W.170, T.171, M.172 8 PLIP interactions: 2 interactions with chain 5, 2 interactions with chain X, 2 interactions with chain 3, 2 interactions with chain M Hydrogen bonds: 5:N.30, X:T.171, X:T.171 Salt bridges: 5:K.29 Hydrophobic interactions: 3:F.33, 3:F.33, M:L.55, M:I.120 CDL.42: 18 residues within 4Å: Chain 6: A.107, Y.108 Chain 7: T.87, N.90, E.95, H.115 Chain 8: Y.83, Y.84, H.88 Chain L: L.13, T.16, F.80 Ligands: CDL.22, 3PE.23, PC1.26 Chain f: R.49, I.52, H.56 13 PLIP interactions: 1 interactions with chain f, 2 interactions with chain 6, 4 interactions with chain 7, 2 interactions with chain L, 4 interactions with chain 8 Salt bridges: f:R.49, 7:H.115, 8:H.88 Hydrophobic interactions: 6:Y.108, L:L.13, L:F.80, 8:Y.83, 8:Y.84, 8:Y.84 Hydrogen bonds: 6:Y.108, 7:N.90, 7:N.90, 7:E.95 CDL.47: 19 residues within 4Å: Chain 0: W.2, F.3, L.6, P.7, I.9, A.10 Chain H: Y.43 Chain I: F.78 Chain g: L.3, V.6, L.7, R.9, G.10, Q.13 Chain h: S.3, A.4, T.5, F.7, I.8 11 PLIP interactions: 4 interactions with chain 0, 4 interactions with chain h, 2 interactions with chain g, 1 interactions with chain I Hydrophobic interactions: 0:F.3, 0:L.6, 0:L.6, 0:I.9, h:F.7, h:F.7, h:I.8, I:F.78 Hydrogen bonds: h:T.5, g:R.9 Salt bridges: g:R.9

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.33: 19 residues within 4Å: Chain O: N.53, I.54, C.55, S.56, G.57, K.58, S.59, E.76, L.102, F.105, Y.106, Q.120, L.123, R.127, R.149, D.154, F.157, E.214 Ligands: MG.34 19 PLIP interactions: 19 interactions with chain O Hydrogen bonds: O:C.55, O:S.56, O:G.57, O:K.58, O:S.59, O:Y.106, O:Q.120, O:R.127, O:R.127, O:E.214, O:Y.221 Salt bridges: O:K.58, O:K.58, O:K.58, O:K.60, O:R.149 pi-Stacking: O:F.157, O:F.157 pi-Cation interactions: O:F.105

1 x MG: MAGNESIUM ION(Non-covalent)

MG.34: 5 residues within 4Å: Chain O: K.58, S.59, E.76, E.148 Ligands: GTP.33 2 PLIP interactions: 2 interactions with chain O Metal complexes: O:S.59, O:E.76

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.35: 25 residues within 4Å: Chain B: R.216 Chain P: G.60, T.62, G.63, F.64, L.65, R.85, C.86, W.108, L.129, V.130, G.131, R.132, F.139, V.144, F.145, I.148, I.167, S.168, H.169, Y.180, K.184, P.203, A.204, I.206 23 PLIP interactions: 22 interactions with chain P, 1 interactions with chain B Hydrophobic interactions: P:I.206 Hydrogen bonds: P:G.60, P:T.62, P:T.62, P:T.62, P:F.64, P:L.65, P:R.85, P:R.85, P:L.129, P:K.184, P:I.206 Water bridges: P:G.63, P:G.63, P:R.85, P:R.85, P:R.132 Salt bridges: P:R.85, P:R.132, P:R.132, B:R.216 pi-Cation interactions: P:R.85, P:R.85

1 x ZN: ZINC ION(Non-covalent)

ZN.36: 5 residues within 4Å: Chain R: C.87, G.89, H.96, C.112, C.115 4 PLIP interactions: 4 interactions with chain R Metal complexes: R:C.87, R:H.96, R:C.112, R:C.115

2 x EHZ: ~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioate(Covalent)

EHZ.37: 17 residues within 4Å: Chain T: S.112, L.113 Chain W: K.29, V.32, L.35, W.39, T.46, K.62, V.63, M.66, F.67, N.70, A.71, I.73, V.79, L.82, F.106 16 PLIP interactions: 15 interactions with chain W, 1 interactions with chain T Hydrophobic interactions: W:K.29, W:V.32, W:L.35, W:W.39, W:W.39, W:T.46, W:K.62, W:V.63, W:M.66, W:F.67, W:F.106, T:L.113 Hydrogen bonds: W:N.70, W:N.70, W:A.71 Salt bridges: W:K.29 EHZ.38: 21 residues within 4Å: Chain L: Y.513 Chain U: D.111, S.112 Chain d: H.12, Q.13, V.16, L.17, A.23, H.26, L.27, W.30, L.44, R.47, F.48, H.51, K.52, E.54, A.60, A.67, E.70, G.74 12 PLIP interactions: 11 interactions with chain d, 1 interactions with chain U Hydrophobic interactions: d:V.16, d:A.23, d:H.26, d:L.44, d:F.48, d:E.70 Hydrogen bonds: d:Q.13, d:R.47, d:H.51, d:K.52, U:S.112 Salt bridges: d:K.52

1 x MYR: MYRISTIC ACID(Covalent)

MYR.45: 12 residues within 4Å: Chain L: N.400, A.406, W.407, L.409, L.486 Chain b: M.143, G.147, Y.153, Q.154 Chain e: G.2, H.4, L.5 6 PLIP interactions: 5 interactions with chain L, 1 interactions with chain e Hydrophobic interactions: L:A.406, L:W.407, L:W.407, L:L.409, L:L.486, e:L.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bridges, H.R. et al., Structural basis of mammalian respiratory complex I inhibition by medicinal biguanides. Science (2023)

Release Date

2023-02-08

Peptides

NADH-ubiquinone oxidoreductase chain 3: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: C
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: D
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: E
NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: F
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: G
NADH-ubiquinone oxidoreductase chain 1: H
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: I
NADH-ubiquinone oxidoreductase chain 6: J
NADH-ubiquinone oxidoreductase chain 4L: K
NADH-ubiquinone oxidoreductase chain 5: L
NADH-ubiquinone oxidoreductase chain 4: M
NADH-ubiquinone oxidoreductase chain 2: N
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: O
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: P
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: S
Acyl carrier protein, mitochondrial: TU
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: V
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: W
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: X
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: Y
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: Z
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: 0
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: 1
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C2: 3
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 4
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: 5
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 6
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: 7
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: 8
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: 9
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: e
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: g
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Y
Y

Z
Z

0
a

1
b

2
c

3
d

4
e

5
f

6
g

7
h

8
i

9
j

a
k

b
l

c
m

d
n

e
o

f
p

g
q

h
r

i
s

Membrane

We predict this structure to be a membrane protein.
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NADH-ubiquinone oxidoreductase chain 3

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH-ubiquinone oxidoreductase chain 6

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 2

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

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