SMTL ID : 7taf.2 (3 other biounits)

Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with inhibitor 11526092

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-5-5-5-5-mer

Ligands

5 x GFI: N,N-dimethyl-5-(3-{2-methyl-4-[5-(trifluoromethyl)-1,2,4-oxadiazol-3-yl]phenoxy}propyl)-1,2-oxazole-3-carboxamide(Non-covalent)

GFI.1: 24 residues within 4Å: Chain A: W.93, I.95, T.97, L.107, L.113, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, Y.193, S.194, V.195, D.215, I.217, L.220, V.239, M.241 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.95, A:I.95, A:A.117, A:I.119, A:I.119, A:I.184, A:Y.193, A:I.217 Hydrogen bonds: A:T.97, A:D.215 GFI.2: 24 residues within 4Å: Chain E: W.93, I.95, T.97, L.107, L.113, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, Y.193, S.194, V.195, D.215, I.217, L.220, V.239, M.241 10 PLIP interactions: 10 interactions with chain E Hydrophobic interactions: E:I.95, E:I.95, E:A.117, E:I.119, E:I.119, E:I.184, E:Y.193, E:I.217 Hydrogen bonds: E:T.97, E:D.215 GFI.3: 24 residues within 4Å: Chain I: W.93, I.95, T.97, L.107, L.113, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, Y.193, S.194, V.195, D.215, I.217, L.220, V.239, M.241 10 PLIP interactions: 10 interactions with chain I Hydrophobic interactions: I:I.95, I:I.95, I:A.117, I:I.119, I:I.119, I:I.184, I:Y.193, I:I.217 Hydrogen bonds: I:T.97, I:D.215 GFI.4: 24 residues within 4Å: Chain M: W.93, I.95, T.97, L.107, L.113, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, Y.193, S.194, V.195, D.215, I.217, L.220, V.239, M.241 9 PLIP interactions: 9 interactions with chain M Hydrophobic interactions: M:I.95, M:I.95, M:A.117, M:I.119, M:I.119, M:I.184, M:Y.193, M:I.217 Hydrogen bonds: M:T.97 GFI.5: 24 residues within 4Å: Chain Q: W.93, I.95, T.97, L.107, L.113, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, Y.193, S.194, V.195, D.215, I.217, L.220, V.239, M.241 10 PLIP interactions: 10 interactions with chain Q Hydrophobic interactions: Q:I.95, Q:I.95, Q:A.117, Q:I.119, Q:I.119, Q:I.184, Q:Y.193, Q:I.217 Hydrogen bonds: Q:T.97, Q:D.215

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lane, T. et al., Isoxazole-3-Carboxamide Derivatives of Pleconaril Destabilize the Viral Capsid of Enterovirus-D68. To Be Published

Release Date

2023-01-25

Peptides

viral protein 1: AEIMQ
viral protein 3: BFJNR
viral protein 2: CGKOS
viral protein 4: DHLPT

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

B
C

F
C

J
C

N
C

R
C

C
B

G
B

K
B

O
B

S
B

D
D

H
D

L
D

P
D

T
D

viral protein 1

viral protein 3

viral protein 2

viral protein 4

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