SMTL ID : 7tag.4 (3 other biounits)

Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with pleconaril

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.1: 21 residues within 4Å: Chain A: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain B: A.24 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.93, A:I.95, A:I.95, A:T.97, A:F.115, A:I.119, A:I.119, A:I.184, A:I.184, A:I.184, A:I.217, A:V.239 pi-Stacking: A:Y.193 Halogen bonds: A:A.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lane, T. et al., Isoxazole-3-Carboxamide Derivatives of Pleconaril Destabilize the Viral Capsid of Enterovirus-D68. To Be Published

Release Date

2023-01-25

Peptides

viral protein 1: A
viral protein 3: B
viral protein 2: C
viral protein 4: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

C
B

D
D

viral protein 1

viral protein 3

viral protein 2

viral protein 4

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