SMTL ID : 7tag.3 (3 other biounits)

Cryo-EM structure of Human Enterovirus D68 US/MO/14-18947 strain virion in complex with pleconaril

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-6-6-6-6-mer

Ligands

6 x W11: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE(Non-covalent)

W11.1: 22 residues within 4Å: Chain A: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain B: A.24 Chain F: L.14 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:W.93, A:I.95, A:I.95, A:T.97, A:F.115, A:I.119, A:I.119, A:I.184, A:I.184, A:I.184, A:I.217, A:V.239 pi-Stacking: A:Y.193 Halogen bonds: A:A.169 W11.2: 21 residues within 4Å: Chain E: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain F: A.24 14 PLIP interactions: 14 interactions with chain E Hydrophobic interactions: E:W.93, E:I.95, E:I.95, E:T.97, E:F.115, E:I.119, E:I.119, E:I.184, E:I.184, E:I.184, E:I.217, E:V.239 pi-Stacking: E:Y.193 Halogen bonds: E:A.169 W11.3: 21 residues within 4Å: Chain I: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain J: A.24 14 PLIP interactions: 14 interactions with chain I Hydrophobic interactions: I:W.93, I:I.95, I:I.95, I:T.97, I:F.115, I:I.119, I:I.119, I:I.184, I:I.184, I:I.184, I:I.217, I:V.239 pi-Stacking: I:Y.193 Halogen bonds: I:A.169 W11.4: 22 residues within 4Å: Chain J: L.14 Chain M: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain N: A.24 14 PLIP interactions: 14 interactions with chain M Hydrophobic interactions: M:W.93, M:I.95, M:I.95, M:T.97, M:F.115, M:I.119, M:I.119, M:I.184, M:I.184, M:I.184, M:I.217, M:V.239 pi-Stacking: M:Y.193 Halogen bonds: M:A.169 W11.5: 22 residues within 4Å: Chain Q: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain R: A.24 Chain V: L.14 14 PLIP interactions: 14 interactions with chain Q Hydrophobic interactions: Q:W.93, Q:I.95, Q:I.95, Q:T.97, Q:F.115, Q:I.119, Q:I.119, Q:I.184, Q:I.184, Q:I.184, Q:I.217, Q:V.239 pi-Stacking: Q:Y.193 Halogen bonds: Q:A.169 W11.6: 21 residues within 4Å: Chain U: W.93, I.95, T.97, F.115, A.117, I.119, A.145, M.146, F.147, A.169, S.170, V.171, I.182, I.184, M.187, Y.193, I.217, L.220, V.239, M.241 Chain V: A.24 14 PLIP interactions: 14 interactions with chain U Hydrophobic interactions: U:W.93, U:I.95, U:I.95, U:T.97, U:F.115, U:I.119, U:I.119, U:I.184, U:I.184, U:I.184, U:I.217, U:V.239 pi-Stacking: U:Y.193 Halogen bonds: U:A.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lane, T. et al., Isoxazole-3-Carboxamide Derivatives of Pleconaril Destabilize the Viral Capsid of Enterovirus-D68. To Be Published

Release Date

2023-01-25

Peptides

viral protein 1: AEIMQU
viral protein 3: BFJNRV
viral protein 2: CGKOSW
viral protein 4: DHLPTX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

E
A

I
A

M
A

Q
A

U
A

B
C

F
C

J
C

N
C

R
C

V
C

C
B

G
B

K
B

O
B

S
B

W
B

D
D

H
D

L
D

P
D

T
D

X
D

viral protein 1

viral protein 3

viral protein 2

viral protein 4

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