- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- hetero-4-4-4-mer
- Ligands
- 20 x CA: CALCIUM ION(Non-covalent)
- 8 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.17: 14 residues within 4Å:- Chain F: K.4211, K.4214, R.4215, M.4954, E.4955, K.4957, C.4958, F.4959, I.4960, F.4975, T.4979, H.4983, N.4984, L.4985
11 PLIP interactions:11 interactions with chain F- Hydrogen bonds: F:F.4959, F:I.4960, F:T.4979, F:H.4983, F:L.4985
- Salt bridges: F:K.4211, F:K.4211, F:K.4214, F:K.4214, F:K.4214, F:R.4215
ATP.21: 11 residues within 4Å:- Chain F: R.886, R.897, D.899, N.921, M.924, H.993, W.996, R.1000, R.1020, N.1035
- Ligands: KVR.22
9 PLIP interactions:9 interactions with chain F- Hydrogen bonds: F:R.886, F:N.921, F:H.993, F:R.1000, F:N.1018, F:N.1035
- Salt bridges: F:R.897, F:R.1020
- pi-Stacking: F:W.996
ATP.25: 14 residues within 4Å:- Chain G: K.4211, K.4214, R.4215, M.4954, E.4955, K.4957, C.4958, F.4959, I.4960, F.4975, T.4979, H.4983, N.4984, L.4985
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:F.4959, G:I.4960, G:T.4979, G:H.4983, G:L.4985
- Salt bridges: G:K.4211, G:K.4211, G:K.4214, G:K.4214, G:K.4214, G:R.4215
ATP.29: 11 residues within 4Å:- Chain G: R.886, R.897, D.899, N.921, M.924, H.993, W.996, R.1000, R.1020, N.1035
- Ligands: KVR.30
9 PLIP interactions:9 interactions with chain G- Hydrogen bonds: G:R.886, G:N.921, G:H.993, G:R.1000, G:N.1018, G:N.1035
- Salt bridges: G:R.897, G:R.1020
- pi-Stacking: G:W.996
ATP.34: 14 residues within 4Å:- Chain H: K.4211, K.4214, R.4215, M.4954, E.4955, K.4957, C.4958, F.4959, I.4960, F.4975, T.4979, H.4983, N.4984, L.4985
11 PLIP interactions:11 interactions with chain H- Hydrogen bonds: H:F.4959, H:I.4960, H:T.4979, H:H.4983, H:L.4985
- Salt bridges: H:K.4211, H:K.4211, H:K.4214, H:K.4214, H:K.4214, H:R.4215
ATP.38: 11 residues within 4Å:- Chain H: R.886, R.897, D.899, N.921, M.924, H.993, W.996, R.1000, R.1020, N.1035
- Ligands: KVR.39
9 PLIP interactions:9 interactions with chain H- Hydrogen bonds: H:R.886, H:N.921, H:H.993, H:R.1000, H:N.1018, H:N.1035
- Salt bridges: H:R.897, H:R.1020
- pi-Stacking: H:W.996
ATP.42: 14 residues within 4Å:- Chain I: K.4211, K.4214, R.4215, M.4954, E.4955, K.4957, C.4958, F.4959, I.4960, F.4975, T.4979, H.4983, N.4984, L.4985
11 PLIP interactions:11 interactions with chain I- Hydrogen bonds: I:F.4959, I:I.4960, I:T.4979, I:H.4983, I:L.4985
- Salt bridges: I:K.4211, I:K.4211, I:K.4214, I:K.4214, I:K.4214, I:R.4215
ATP.46: 11 residues within 4Å:- Chain I: R.886, R.897, D.899, N.921, M.924, H.993, W.996, R.1000, R.1020, N.1035
- Ligands: KVR.47
9 PLIP interactions:9 interactions with chain I- Hydrogen bonds: I:R.886, I:N.921, I:H.993, I:R.1000, I:N.1018, I:N.1035
- Salt bridges: I:R.897, I:R.1020
- pi-Stacking: I:W.996
- 4 x ZN: ZINC ION(Non-covalent)
ZN.19: 4 residues within 4Å:- Chain F: C.4958, C.4961, H.4978, H.4983
4 PLIP interactions:4 interactions with chain F- Metal complexes: F:C.4958, F:C.4961, F:H.4978, F:H.4983
ZN.27: 4 residues within 4Å:- Chain G: C.4958, C.4961, H.4978, H.4983
4 PLIP interactions:4 interactions with chain G- Metal complexes: G:C.4958, G:C.4961, G:H.4978, G:H.4983
ZN.36: 4 residues within 4Å:- Chain H: C.4958, C.4961, H.4978, H.4983
4 PLIP interactions:4 interactions with chain H- Metal complexes: H:C.4958, H:C.4961, H:H.4978, H:H.4983
ZN.44: 4 residues within 4Å:- Chain I: C.4958, C.4961, H.4978, H.4983
4 PLIP interactions:4 interactions with chain I- Metal complexes: I:C.4958, I:C.4961, I:H.4978, I:H.4983
- 4 x CFF: CAFFEINE(Non-covalent)
CFF.20: 5 residues within 4Å:- Chain F: F.3753, E.4239, W.4716, I.4996, W.5011
4 PLIP interactions:4 interactions with chain F- Hydrogen bonds: F:E.4239
- pi-Stacking: F:W.4716, F:W.4716, F:W.4716
CFF.28: 5 residues within 4Å:- Chain G: F.3753, E.4239, W.4716, I.4996, W.5011
4 PLIP interactions:4 interactions with chain G- Hydrogen bonds: G:E.4239
- pi-Stacking: G:W.4716, G:W.4716, G:W.4716
CFF.37: 5 residues within 4Å:- Chain H: F.3753, E.4239, W.4716, I.4996, W.5011
4 PLIP interactions:4 interactions with chain H- Hydrogen bonds: H:E.4239
- pi-Stacking: H:W.4716, H:W.4716, H:W.4716
CFF.45: 5 residues within 4Å:- Chain I: F.3753, E.4239, W.4716, I.4996, W.5011
4 PLIP interactions:4 interactions with chain I- Hydrogen bonds: I:E.4239
- pi-Stacking: I:W.4716, I:W.4716, I:W.4716
- 4 x KVR: 4-[(7-methoxy-2,3-dihydro-1,4-benzothiazepin-4(5H)-yl)methyl]benzoic acid(Non-covalent)
KVR.22: 10 residues within 4Å:- Chain F: H.879, W.882, H.904, C.906, L.913, E.917, R.918, Y.920, N.921
- Ligands: ATP.21
6 PLIP interactions:6 interactions with chain F- Hydrophobic interactions: F:W.882, F:Y.920
- Hydrogen bonds: F:E.917
- Salt bridges: F:H.879, F:H.904
- pi-Cation interactions: F:W.882
KVR.30: 10 residues within 4Å:- Chain G: H.879, W.882, H.904, C.906, L.913, E.917, R.918, Y.920, N.921
- Ligands: ATP.29
6 PLIP interactions:6 interactions with chain G- Hydrophobic interactions: G:W.882, G:Y.920
- Hydrogen bonds: G:E.917
- Salt bridges: G:H.879, G:H.904
- pi-Cation interactions: G:W.882
KVR.39: 10 residues within 4Å:- Chain H: H.879, W.882, H.904, C.906, L.913, E.917, R.918, Y.920, N.921
- Ligands: ATP.38
6 PLIP interactions:6 interactions with chain H- Hydrophobic interactions: H:W.882, H:Y.920
- Hydrogen bonds: H:E.917
- Salt bridges: H:H.879, H:H.904
- pi-Cation interactions: H:W.882
KVR.47: 10 residues within 4Å:- Chain I: H.879, W.882, H.904, C.906, L.913, E.917, R.918, Y.920, N.921
- Ligands: ATP.46
6 PLIP interactions:6 interactions with chain I- Hydrophobic interactions: I:W.882, I:Y.920
- Hydrogen bonds: I:E.917
- Salt bridges: I:H.879, I:H.904
- pi-Cation interactions: I:W.882
- 8 x L9R: (2S)-3-(octadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)
L9R.23: 13 residues within 4Å:- Chain F: V.4847, L.4850, Y.4851, N.4857, F.4858, F.4859, Y.4909, Y.4912, F.4916, F.4923
- Chain H: Y.4630, N.4805
- Ligands: L9R.33
11 PLIP interactions:11 interactions with chain F- Hydrophobic interactions: F:V.4847, F:L.4850, F:Y.4851, F:Y.4851, F:F.4858, F:F.4858, F:F.4859, F:Y.4912, F:F.4916, F:F.4923
- Hydrogen bonds: F:Y.4909
L9R.24: 14 residues within 4Å:- Chain F: W.4794, V.4797, L.4801, Y.4804, N.4805, F.4807, F.4808, A.4811, L.4814
- Chain G: L.4850, V.4853, N.4857, F.4858
- Ligands: L9R.31
10 PLIP interactions:3 interactions with chain G, 7 interactions with chain F- Hydrophobic interactions: G:L.4850, G:V.4853, G:F.4858, F:V.4797, F:L.4801, F:L.4801, F:F.4808, F:A.4811, F:L.4814
- Hydrogen bonds: F:N.4805
L9R.31: 13 residues within 4Å:- Chain F: Y.4630, N.4805
- Chain G: V.4847, L.4850, Y.4851, N.4857, F.4858, F.4859, Y.4909, Y.4912, F.4916, F.4923
- Ligands: L9R.24
11 PLIP interactions:11 interactions with chain G- Hydrophobic interactions: G:V.4847, G:L.4850, G:Y.4851, G:Y.4851, G:F.4858, G:F.4858, G:F.4859, G:Y.4912, G:F.4916, G:F.4923
- Hydrogen bonds: G:Y.4909
L9R.32: 14 residues within 4Å:- Chain G: W.4794, V.4797, L.4801, Y.4804, N.4805, F.4807, F.4808, A.4811, L.4814
- Chain I: L.4850, V.4853, N.4857, F.4858
- Ligands: L9R.48
9 PLIP interactions:6 interactions with chain G, 3 interactions with chain I- Hydrophobic interactions: G:V.4797, G:L.4801, G:L.4801, G:A.4811, G:L.4814, I:L.4850, I:V.4853, I:F.4858
- Hydrogen bonds: G:N.4805
L9R.33: 14 residues within 4Å:- Chain F: L.4850, V.4853, N.4857, F.4858
- Chain H: W.4794, V.4797, L.4801, Y.4804, N.4805, F.4807, F.4808, A.4811, L.4814
- Ligands: L9R.23
9 PLIP interactions:6 interactions with chain H, 3 interactions with chain F- Hydrophobic interactions: H:V.4797, H:L.4801, H:L.4801, H:A.4811, H:L.4814, F:L.4850, F:V.4853, F:F.4858
- Hydrogen bonds: H:N.4805
L9R.40: 13 residues within 4Å:- Chain H: V.4847, L.4850, Y.4851, N.4857, F.4858, F.4859, Y.4909, Y.4912, F.4916, F.4923
- Chain I: Y.4630, N.4805
- Ligands: L9R.41
11 PLIP interactions:11 interactions with chain H- Hydrophobic interactions: H:V.4847, H:L.4850, H:Y.4851, H:Y.4851, H:F.4858, H:F.4858, H:F.4859, H:Y.4912, H:F.4916, H:F.4923
- Hydrogen bonds: H:Y.4909
L9R.41: 14 residues within 4Å:- Chain H: L.4850, V.4853, N.4857, F.4858
- Chain I: W.4794, V.4797, L.4801, Y.4804, N.4805, F.4807, F.4808, A.4811, L.4814
- Ligands: L9R.40
10 PLIP interactions:3 interactions with chain H, 7 interactions with chain I- Hydrophobic interactions: H:L.4850, H:V.4853, H:F.4858, I:V.4797, I:L.4801, I:L.4801, I:F.4808, I:A.4811, I:L.4814
- Hydrogen bonds: I:N.4805
L9R.48: 13 residues within 4Å:- Chain G: Y.4630, N.4805
- Chain I: V.4847, L.4850, Y.4851, N.4857, F.4858, F.4859, Y.4909, Y.4912, F.4916, F.4923
- Ligands: L9R.32
11 PLIP interactions:11 interactions with chain I- Hydrophobic interactions: I:V.4847, I:L.4850, I:Y.4851, I:Y.4851, I:F.4858, I:F.4858, I:F.4859, I:Y.4912, I:F.4916, I:F.4923
- Hydrogen bonds: I:Y.4909
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Melville, Z. et al., A drug and ATP binding site in type 1 ryanodine receptor. Structure (2022)
- Release Date
- 2022-05-18
- Peptides
- Calmodulin-1: ACDE
Peptidyl-prolyl cis-trans isomerase FKBP1A: BJKL
Ryanodine receptor 1: FGHI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
KC
DD
EE
CB
FJ
HK
JL
OF
AG
BH
GI
I - Membrane
-
We predict this structure to be a membrane protein.
SMTL ID : 7tzc.1
A drug and ATP binding site in type 1 ryanodine receptor
Calmodulin-1
Toggle Identical (ACDE)Peptidyl-prolyl cis-trans isomerase FKBP1A
Toggle Identical (BJKL)Ryanodine receptor 1
Toggle Identical (FGHI)Related Entries With Identical Sequence
1a7x.1 | 1b6c.1 | 1b6c.2 | 1b6c.3 | 1b6c.4 | 1b6c.5 | 1d6o.1 | 1d6o.2 | 1d6o.3 | 1d6o.4 | 1d7h.1 | 1d7h.2 | 1d7h.3 | 1d7h.4 | 1d7i.1 | 1d7i.2 | 1d7i.3 | 1d7i.4 | 1d7j.1 | 1d7j.2 | 1d7j.3 | 1d7j.4 | 1f40.1 | 1fap.1 | 1fkb.1 | 1fkd.1 | 1fkd.2 | 1fkf.1 | 1fkg.1 | 1fkh.1 more...less...1fki.1 | 1fkj.1 | 1fkj.2 | 1fkr.1 | 1fks.1 | 1fkt.1 | 1j4h.1 | 1j4i.1 | 1j4r.1 | 1j4r.2 | 1j4r.3 | 1nsg.1 | 1qpf.1 | 1qpf.2 | 1qpf.3 | 1qpf.4 | 1qpl.1 | 2dg3.1 | 2fap.1 | 2fke.1 | 2fke.2 | 2ppn.1 | 2rse.1 | 3fap.1 | 3j8h.1 | 4dh0.1 | 4fap.1 | 5gky.1 | 5gkz.1 | 5gl0.1 | 5gl1.1 | 5j8v.1 | 7m6a.1 | 7m6l.1 | 8drp.1 | 8dtb.1 | 8duj.1 | 8dve.1 | 8er6.1 | 8er6.2 | 8er6.3 | 8sen.1 | 8seo.1 | 8sep.1 | 8seq.1 | 8ser.1 | 8ses.1 | 8set.1 | 8seu.1 | 8sev.1 | 8sew.1 | 8sex.1 | 8sey.1 | 8sez.1 | 8sf0.1 | 9e17.1 | 9e18.1 | 9e19.1 | 9e1a.1 | 9e1b.1 | 9e1c.1 | 9e1d.1 | 9e1e.1 | 9e1f.1 | 9e1g.1 | 9e1h.1 | 9e1i.1