SMTL ID : 7uah.2 (1 other biounit)

Macrocyclic plasmin inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.57 Å

Oligo State

monomer

Ligands

1 x M63: (6S,9R,19S,22R)-N-{[4-(aminomethyl)phenyl]methyl}-22-[(3-chlorobenzene-1-sulfonyl)amino]-3,12,21-trioxo-2,6,9,13,20-pentaazatetracyclo[22.2.2.2~6,9~.2~14,17~]dotriaconta-1(26),14,16,24,27,29-hexaene-19-carboxamide(Non-covalent)

M63.1: 18 residues within 4Å: Chain A: H.62, R.103, D.105, R.178, Q.180, D.194, S.195, C.196, Q.197, A.200, T.218, S.219, W.220, G.221, L.222, G.223, C.224, G.231 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.178, A:T.218, A:W.220, A:W.220, A:W.220 Hydrogen bonds: A:S.195, A:S.219, A:G.221, A:G.221, A:G.223 Water bridges: A:Q.180, A:W.220, A:R.226, A:G.231, A:V.232 pi-Stacking: A:H.62

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.15, H.28, P.29 3 PLIP interactions: 3 interactions with chain A Water bridges: A:V.26 Salt bridges: A:K.15, A:H.28 SO4.3: 0 residues within 4Å: (No contacts) 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.211, A:K.211

1 x NZ5: (2~{R})-butane-1,2-diol(Non-covalent)

NZ5.4: 7 residues within 4Å: Chain A: Y.172, E.173, F.174, N.176, R.178, L.222, K.229 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.172 Hydrogen bonds: A:N.176, A:R.178, A:R.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wiedemeyer, S.J.A. et al., Synthesis and Structural Characterization of Macrocyclic Plasmin Inhibitors. Chemmedchem (2023)

Release Date

2023-03-15

Peptides

Plasminogen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Plasminogen

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