SMTL ID : 8f7v.2 (1 other biounit)

Macrocyclic plasmin inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x EUA: (6S,9R,19S,22R)-N-{[4-(aminomethyl)phenyl]methyl}-22-[(benzenesulfonyl)amino]-3,12,21-trioxo-2,6,9,13,20-pentaazatetracyclo[22.2.2.2~6,9~.2~14,17~]dotriaconta-1(26),14,16,24,27,29-hexaene-19-carboxamide(Non-covalent)

EUA.1: 18 residues within 4Å: Chain A: H.62, D.105, R.178, Q.180, D.194, S.195, C.196, Q.197, A.200, T.218, S.219, W.220, G.221, L.222, G.223, C.224, G.231, Y.233 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:R.178, A:Q.197, A:T.218, A:W.220, A:W.220, A:W.220 Hydrogen bonds: A:D.194, A:S.195, A:S.219, A:W.220, A:G.221, A:G.221, A:G.223 Water bridges: A:H.62, A:Q.180, A:R.226, A:G.231, A:V.232 pi-Stacking: A:H.62

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.9, D.210, K.211 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.211 Salt bridges: A:K.9, A:K.211 SO4.3: 2 residues within 4Å: Chain A: R.171, Y.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.172 Water bridges: A:N.170 Salt bridges: A:R.171 SO4.4: 2 residues within 4Å: Chain A: Q.180, S.181 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.181, A:S.181 Water bridges: A:T.182, A:T.182 SO4.5: 3 residues within 4Å: Chain A: R.69, P.70, S.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.71, A:S.71 SO4.6: 3 residues within 4Å: Chain A: R.41, R.69, S.72 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.72 Water bridges: A:R.41 Salt bridges: A:R.41, A:R.69 SO4.7: 3 residues within 4Å: Chain A: R.136, P.162, H.188 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.136 Water bridges: A:R.136, A:H.188, A:L.189, A:L.189, A:A.190 Salt bridges: A:H.188

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 6 residues within 4Å: Chain A: Y.172, E.173, F.174, N.176, R.178, K.229 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.176, A:R.178, A:R.178, A:K.229 Water bridges: A:E.173, A:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guojie, W., Synthesis and structural characterization of new macrocyclicplasmin inhibitors. Chemmedchem (2023)

Release Date

2023-02-08

Peptides

Plasminogen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Plasminogen

Related Entries With Identical Sequence