SMTL ID : 8f7u.2 (1 other biounit)

Macrocyclic Plasmin Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

monomer

Ligands

1 x GGI: (5S,8R,18S,21R)-N-{[4-(aminomethyl)phenyl]methyl}-21-[(benzenesulfonyl)amino]-3,11,20-trioxo-2,5,8,12,19-pentaazatetracyclo[21.2.2.2~5,8~.2~13,16~]hentriaconta-1(25),13,15,23,26,28-hexaene-18-carboxamide(Non-covalent)

GGI.1: 20 residues within 4Å: Chain A: H.62, R.103, D.105, R.178, Q.180, E.183, D.194, S.195, C.196, Q.197, A.200, T.218, S.219, W.220, G.221, L.222, G.223, C.224, G.231, Y.233 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:Q.197, A:T.218, A:W.220, A:W.220, A:W.220 Hydrogen bonds: A:S.195, A:Q.197, A:S.219, A:W.220, A:G.221, A:G.221, A:G.223 Water bridges: A:D.105, A:E.183, A:R.226, A:G.231, A:V.232 Salt bridges: A:E.183, A:E.183

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 3 residues within 4Å: Chain A: K.15, H.28, P.29 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.15, A:K.15 Salt bridges: A:K.15, A:H.28 SO4.3: 3 residues within 4Å: Chain A: R.69, P.70, S.71 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.71, A:S.71 SO4.4: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.211 SO4.6: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: Y.172, E.173, F.174, N.176, R.178, K.229 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.176, A:R.178, A:R.178, A:K.229 Water bridges: A:E.173, A:K.229

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guojie, W., Synthesis and structural characterization of new macrocyclicplasmin inhibitors. Chemmedchem (2023)

Release Date

2023-02-08

Peptides

Activation peptide: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Activation peptide

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