SMTL ID : 8f7v.1 (1 other biounit)

Macrocyclic plasmin inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

1 x EUA: (6S,9R,19S,22R)-N-{[4-(aminomethyl)phenyl]methyl}-22-[(benzenesulfonyl)amino]-3,12,21-trioxo-2,6,9,13,20-pentaazatetracyclo[22.2.2.2~6,9~.2~14,17~]dotriaconta-1(26),14,16,24,27,29-hexaene-19-carboxamide(Non-covalent)

EUA.1: 18 residues within 4Å: Chain A: H.62, D.105, R.178, Q.180, D.194, S.195, C.196, Q.197, A.200, T.218, S.219, W.220, G.221, L.222, G.223, C.224, G.231, Y.233 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:R.178, A:Q.197, A:T.218, A:W.220, A:W.220 Hydrogen bonds: A:S.195, A:S.195, A:S.219, A:G.221, A:G.221, A:G.223 Water bridges: A:Q.180, A:W.220, A:G.231, A:V.232 pi-Stacking: A:H.62

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: K.9, K.209, D.210, K.211 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.9, A:K.209, A:K.211 SO4.3: 2 residues within 4Å: Chain A: R.171, Y.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.172 Water bridges: A:E.173 SO4.4: 5 residues within 4Å: Chain A: R.136, G.187, H.188, L.189, A.190 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.189, A:A.190 Salt bridges: A:R.136, A:H.188

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guojie, W., Synthesis and structural characterization of new macrocyclicplasmin inhibitors. Chemmedchem (2023)

Release Date

2023-02-08

Peptides

Plasminogen: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Plasminogen

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