SMTL ID : 7ug1.1

CDK2 liganded with para chloro ANS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

2 x N5R: 8-(4-chloroanilino)naphthalene-1-sulfonic acid(Non-covalent)

N5R.1: 18 residues within 4Å: Chain A: Y.23, K.41, I.43, L.63, K.64, V.72, L.74, L.86, F.88, A.152, D.153, F.154, L.156, A.157, V.162, V.164 Ligands: N5R.2, PO4.3 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.23, A:Y.23, A:I.43, A:L.63, A:K.64, A:V.72, A:L.74, A:L.86, A:L.156 Hydrogen bonds: A:D.153, A:F.154 Water bridges: A:Y.23 Salt bridges: A:K.41 pi-Stacking: A:F.88 N5R.2: 6 residues within 4Å: Chain A: I.60, K.64, H.79, L.84, L.86 Ligands: N5R.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.60, A:L.84, A:L.86 Salt bridges: A:K.64, A:H.79 pi-Stacking: A:H.79

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 6 residues within 4Å: Chain A: V.26, K.41, A.152, D.153 Ligands: N5R.1, EDO.4 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.153 Water bridges: A:Y.23 Salt bridges: A:K.41

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 7 residues within 4Å: Chain A: I.18, V.26, A.39, F.88, L.91, L.142 Ligands: PO4.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Allosteric inhibitors of CDK2. To Be Published

Release Date

2023-04-12

Peptides

Cyclin-dependent kinase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cyclin-dependent kinase 2

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