SMTL ID : 7uja.1

Cryo-EM structure of Human respiratory syncytial virus F variant (construct pXCS847A)

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-3-3-3-3-3-3-mer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: N.364, A.368, R.371 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.368 Hydrogen bonds: A:N.364 NAG.2: 2 residues within 4Å: Chain C: N.364, A.368 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:A.368 Hydrogen bonds: C:N.364 NAG.3: 2 residues within 4Å: Chain J: N.364, A.368 2 PLIP interactions: 2 interactions with chain J Hydrophobic interactions: J:A.368 Hydrogen bonds: J:N.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Che, Y. et al., Rational design of a highly immunogenic prefusion-stabilized F glycoprotein antigen for a respiratory syncytial virus vaccine. Sci Transl Med (2023)

Release Date

2023-04-19

Peptides

RSV variant (construct pXCS847A) F1: ACJ
AM14 Fab heavy chain: BGK
AM14 Fab light chain: DNO
AM22 Fab heavy chain: EHL
AM22 Fab light chain: FIM
RSV variant (construct pXCS847A) F2: PQR

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

J
K

B
B

G
G

K
L

D
D

N
H

O
M

E
E

H
I

L
N

F
F

I
J

M
O

P
P

Q
Q

R
R

RSV variant (construct pXCS847A) F1

AM14 Fab heavy chain

AM14 Fab light chain

AM22 Fab heavy chain

AM22 Fab light chain

RSV variant (construct pXCS847A) F2

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