SMTL ID : 7unf.1

CryoEM structure of a mEAK7 bound human V-ATPase complex

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-1-1-3-3-1-3-3-1-1-1-1-1-1-1-1-9-1-mer
Ligands
1 x NAG- NAG- BMA- MAN- MAN- MAN- GLC- GLC: alpha-D-glucopyranose-(1-3)-alpha-D-glucopyranose-(1-3)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose
1 x MAN- MAN: alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose(Non-covalent)
1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)
6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
9 x POV: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wang, R. et al., Molecular basis of mEAK7-mediated human V-ATPase regulation. Nat Commun (2022)
Release Date
2022-06-15
Peptides
V-type proton ATPase 116 kDa subunit a 4: A
KIAA1609 protein, isoform CRA_a: B
V-type proton ATPase catalytic subunit A: CDE
V-type proton ATPase subunit B, brain isoform: FGH
V-type proton ATPase subunit D: I
V-type proton ATPase subunit E 1: JKL
V-type proton ATPase subunit G 1: MNO
V-type proton ATPase subunit F: P
V-type proton ATPase subunit C 1: Q
V-type proton ATPase subunit H: R
V-type proton ATPase subunit d 1: S
V-type proton ATPase subunit e 1: T
Ribonuclease kappa: U
V-type proton ATPase subunit S1: V
ATPase H(+)-transporting lysosomal accessory protein 2: W
V-type proton ATPase 16 kDa proteolipid subunit: XY0123456
V-type proton ATPase 21 kDa proteolipid subunit: Z
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
a
B
U
C
L
D
M
E
N
F
O
G
P
H
Q
I
D
J
b
K
c
L
d
M
e
N
f
O
g
P
F
Q
C
R
H
S
k
T
m
U
n
V
s
W
r
X
8
Y
9
0
2
1
3
2
4
3
5
4
6
5
7
6
0
Z
1
Membrane
We predict this structure to be a membrane protein.

V-type proton ATPase 116 kDa subunit a 4

KIAA1609 protein, isoform CRA_a

V-type proton ATPase catalytic subunit A

Toggle Identical (CDE)

V-type proton ATPase subunit B, brain isoform

Toggle Identical (FGH)

V-type proton ATPase subunit D

V-type proton ATPase subunit E 1

V-type proton ATPase subunit G 1

Toggle Identical (MN)

V-type proton ATPase subunit F

V-type proton ATPase subunit C 1

V-type proton ATPase subunit H

V-type proton ATPase subunit d 1

V-type proton ATPase subunit e 1

Ribonuclease kappa

V-type proton ATPase subunit S1

ATPase H(+)-transporting lysosomal accessory protein 2

V-type proton ATPase 16 kDa proteolipid subunit

Toggle Identical (XY0123456)

V-type proton ATPase 21 kDa proteolipid subunit

Related Entries With Identical Sequence

6wlw.1 | 6wlz.1 | 6wm2.1 | 6wm3.1 | 6wm4.1 | 6xbw.1 | 6xby.1 | 7khr.1 | 7u4t.1 | 7u8o.1 | 7u8p.1 | 7u8q.1 | 7u8r.1