SMTL ID : 7v2d.1

Deactive state complex I from Q10 dataset

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: I.178, P.196, C.352, G.353, Q.354, C.355, C.358, T.396, I.397, C.398, L.400, G.401 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.352, A:C.355, A:C.358, A:C.398 SF4.3: 12 residues within 4Å: Chain B: C.77, I.78, A.79, C.80, K.81, C.83, I.94, Y.109, C.126, V.128, A.130, I.131 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.77, B:C.80, B:C.83, B:C.126 SF4.4: 12 residues within 4Å: Chain B: H.65, C.87, P.88, I.92, C.116, I.117, Y.118, C.119, G.120, F.121, C.122, E.133 5 PLIP interactions: 5 interactions with chain B, Salt bridges: B:E.133 Metal complexes: B:C.87, B:C.116, B:C.119, B:C.122 SF4.6: 10 residues within 4Å: Chain C: C.31, C.32, G.94, S.95, C.96, C.126, P.127 Chain P: R.85, R.105, H.190 5 PLIP interactions: 5 interactions with chain C, Metal complexes: C:C.31, C:C.31, C:C.32, C:C.96, C:C.126 SF4.10: 11 residues within 4Å: Chain L: H.96, D.99, C.100, C.103, Q.105, G.106, C.109, L.111, Q.112, V.200, G.201 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:H.96, L:C.100, L:C.103, L:C.109 SF4.11: 12 residues within 4Å: Chain L: M.145, C.148, I.149, Q.150, C.151, T.152, R.153, C.154, V.178, C.198, V.200, L.203 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.148, L:C.151, L:C.154, L:C.198

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 17 residues within 4Å: Chain A: G.60, R.61, G.62, K.71, N.89, D.91, E.92, G.93, Y.177, G.180, E.181, E.182, V.215, A.216, N.217, A.399, L.400 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Y.177, A:Y.177, A:E.181, A:E.181, A:A.399, A:L.400 Hydrogen bonds: A:G.62, A:G.62, A:N.89, A:E.92, A:G.93, A:V.215, A:N.217 Salt bridges: A:K.71

9 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.5: 23 residues within 4Å: Chain B: T.24, L.25, W.27, L.30, L.34 Chain P: R.233 Chain S: V.17, I.24, L.27 Chain U: I.38, L.41 Chain f: P.180, M.183, M.184, F.186, I.187, T.238, I.273, Y.277, L.288, S.292, F.293, L.296 20 PLIP interactions: 8 interactions with chain f, 5 interactions with chain B, 3 interactions with chain S, 2 interactions with chain U, 2 interactions with chain P Hydrophobic interactions: f:P.180, f:F.186, f:F.186, f:T.238, f:I.273, f:Y.277, f:F.293, f:L.296, B:W.27, B:W.27, B:W.27, B:L.30, B:L.34, S:I.24, S:L.27, U:I.38, U:L.41 Hydrogen bonds: S:K.14 Salt bridges: P:R.233, P:R.233 PEE.18: 9 residues within 4Å: Chain 6: W.167 Chain 9: F.568, K.572, M.573 Chain T: G.108, I.109, A.112, Y.116, T.120 6 PLIP interactions: 1 interactions with chain 6, 3 interactions with chain T, 2 interactions with chain 9 Hydrophobic interactions: 6:W.167, T:I.109, T:A.112, T:Y.116, 9:K.572 Salt bridges: 9:K.572 PEE.21: 14 residues within 4Å: Chain 9: W.66, H.67, W.68, L.78, F.138, I.142 Chain Z: I.80, Y.84, H.88 Ligands: CDL.20, CDL.28, PLX.35 Chain e: P.371, L.449 11 PLIP interactions: 2 interactions with chain e, 3 interactions with chain Z, 6 interactions with chain 9 Hydrophobic interactions: e:P.371, e:L.449, Z:I.80, Z:Y.84, Z:H.88, 9:W.66, 9:W.66, 9:W.66, 9:W.68, 9:F.138, 9:I.142 PEE.24: 12 residues within 4Å: Chain 6: M.284, L.287, L.288, Y.291, R.295 Chain 9: L.562, S.567, Q.570 Chain P: Y.20 Chain e: F.151, Y.152, A.155 11 PLIP interactions: 2 interactions with chain 9, 4 interactions with chain e, 5 interactions with chain 6 Hydrophobic interactions: 9:L.562, 9:Q.570, e:F.151, e:F.151, e:F.151, e:Y.152, 6:L.287, 6:Y.291, 6:Y.291 Hydrogen bonds: 6:Y.291 Salt bridges: 6:R.295 PEE.25: 14 residues within 4Å: Chain 7: L.24, L.27, N.28, A.29 Chain C: V.14, R.149, L.150, W.153, R.156 Ligands: PLX.7, UQ.38 Chain f: A.52, L.53, F.56 7 PLIP interactions: 3 interactions with chain C, 2 interactions with chain f, 2 interactions with chain 7 Hydrophobic interactions: C:L.150, C:W.153, f:A.52, f:F.56, 7:L.24, 7:L.27 Salt bridges: C:R.156 PEE.26: 13 residues within 4Å: Chain 7: A.99, L.102, A.103, W.106 Chain S: L.8, A.11, L.18, S.21, F.22, G.25 Chain f: P.295, L.298, M.302 12 PLIP interactions: 3 interactions with chain f, 5 interactions with chain 7, 4 interactions with chain S Hydrophobic interactions: f:P.295, f:L.298, 7:A.99, 7:L.102, 7:W.106, 7:W.106, S:L.8, S:A.11, S:F.22, S:F.22 Salt bridges: f:K.291 Hydrogen bonds: 7:W.106 PEE.30: 13 residues within 4Å: Chain 0: N.85, R.86 Chain 9: T.166, Q.170, L.173, Y.174, L.218, L.229, M.533, H.534, T.538 Chain e: M.401, L.405 8 PLIP interactions: 6 interactions with chain 9, 1 interactions with chain 0, 1 interactions with chain e Hydrophobic interactions: 9:L.173, 9:L.218, 9:L.229, 0:R.86, e:L.405 Hydrogen bonds: 9:Q.170 Salt bridges: 9:H.534, 9:H.534 PEE.31: 18 residues within 4Å: Chain 7: I.3, M.4, L.7 Chain Q: A.39 Chain U: F.138, I.139, W.140, Y.141, T.142 Chain a: I.34, G.38, G.42, L.45, S.50, F.57 Chain f: M.98, N.99, F.104 10 PLIP interactions: 4 interactions with chain a, 2 interactions with chain f, 1 interactions with chain Q, 2 interactions with chain 7, 1 interactions with chain U Hydrophobic interactions: a:I.34, a:F.57, f:F.104, 7:I.3, 7:L.7, U:I.139 Hydrogen bonds: a:S.50, a:S.50, f:N.99, Q:A.39 PEE.33: 17 residues within 4Å: Chain 6: I.276, I.277 Chain 9: L.562 Chain T: L.123, E.130, W.132 Ligands: PLX.34 Chain e: A.155, P.159, Y.166, S.191, F.194, M.195, L.197, A.198, V.205, L.212 13 PLIP interactions: 7 interactions with chain e, 2 interactions with chain 6, 3 interactions with chain T, 1 interactions with chain 9 Hydrophobic interactions: e:P.159, e:F.194, e:L.197, e:L.197, e:V.205, e:L.212, 6:I.276, 6:I.277, T:L.123, T:W.132, T:W.132, 9:L.562 Hydrogen bonds: e:S.191

6 x PLX: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL(Non-covalent)(Covalent)

PLX.7: 13 residues within 4Å: Chain C: K.9, L.10, L.13, W.16, R.19, K.145 Chain M: F.27, R.28, N.30, W.74, V.76 Ligands: PEE.25 Chain f: I.49 7 PLIP interactions: 6 interactions with chain C, 1 interactions with chain f Hydrophobic interactions: C:L.10, C:L.13, f:I.49 Salt bridges: C:R.19, C:R.19, C:K.145, C:K.145 PLX.22: 24 residues within 4Å: Chain 4: S.4, R.9, P.11, L.12, F.14, M.35, F.72, L.76, R.79 Chain 5: P.1, F.2, F.3 Chain 6: I.202, L.203, L.206, I.207, T.210, M.261, L.332, M.339, A.342, L.343, L.346, N.347 12 PLIP interactions: 6 interactions with chain 4, 6 interactions with chain 6 Hydrophobic interactions: 4:F.72, 4:F.72, 4:F.72, 4:L.76, 6:L.203, 6:L.206, 6:I.207, 6:L.332, 6:L.332, 6:M.339 Salt bridges: 4:R.9, 4:R.79 PLX.27: 10 residues within 4Å: Chain 5: L.13 Chain 7: N.83, T.86, M.90 Chain a: S.148, Y.149, T.151, W.152, I.155, W.159 7 PLIP interactions: 1 interactions with chain 5, 5 interactions with chain a, 1 interactions with chain 7 Hydrophobic interactions: 5:L.13, a:W.152, a:I.155, a:I.155, a:W.159 pi-Cation interactions: a:Y.149 Hydrogen bonds: 7:T.86 PLX.34: 11 residues within 4Å: Chain T: L.119, A.122 Ligands: PEE.33 Chain e: N.188, S.189, W.190, I.193, M.201, P.260, F.261, L.264 8 PLIP interactions: 2 interactions with chain T, 6 interactions with chain e Hydrophobic interactions: T:L.119, T:A.122, e:W.190, e:I.193, e:P.260, e:F.261, e:L.264 pi-Cation interactions: e:W.190 PLX.35: 17 residues within 4Å: Chain 2: S.56, V.59, A.60, Y.61 Chain 9: M.20, N.23, W.66 Ligands: CDL.20, PEE.21, CDL.28 Chain e: L.39, V.67, L.68, W.71, L.446, L.447, N.450 6 PLIP interactions: 4 interactions with chain e, 1 interactions with chain 2, 1 interactions with chain 9 Hydrophobic interactions: e:L.39, e:W.71, e:N.450, 2:V.59, 9:N.23 Hydrogen bonds: e:N.450 PLX.36: 10 residues within 4Å: Chain Y: I.37, R.74, T.75, F.76, Y.77, D.78 Chain e: K.3, L.36, I.37, S.40 6 PLIP interactions: 2 interactions with chain Y, 4 interactions with chain e Hydrophobic interactions: Y:I.37, e:L.36, e:I.37 Salt bridges: Y:D.78, e:K.3, e:K.3

2 x 8Q1: S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate(Covalent)

8Q1.8: 20 residues within 4Å: Chain D: M.12, K.16, V.19, R.20, L.22, W.26, V.50, M.53, F.54, M.55, N.57, A.58, V.60, V.66, L.69, G.73, F.93 Chain F: D.43, S.44, L.45 14 PLIP interactions: 12 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:L.22, D:W.26, D:W.26, D:V.50, D:M.53, D:F.54, D:V.66, D:F.93 Hydrogen bonds: D:K.16, D:R.20, D:A.58, F:S.44, F:L.45 Salt bridges: D:K.16 8Q1.19: 17 residues within 4Å: Chain 9: F.513 Chain V: D.43, S.44, L.45 Chain d: H.11, Q.12, A.22, M.43, R.46, F.47, H.50, K.51, L.62, L.63, A.66, E.69, G.73 7 PLIP interactions: 4 interactions with chain d, 2 interactions with chain V, 1 interactions with chain 9 Hydrophobic interactions: d:A.22, d:F.47, d:K.51, 9:F.513 Hydrogen bonds: d:Q.12, V:S.44, V:L.45

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.9: 22 residues within 4Å: Chain C: R.156 Chain I: G.25, T.27, G.28, F.29, L.30, R.50, C.51, L.94, V.95, G.96, R.97, F.104, V.109, F.110, H.134, Y.145, K.149, P.168, D.170, I.171, R.177 22 PLIP interactions: 21 interactions with chain I, 1 interactions with chain C Hydrophobic interactions: I:P.168, I:I.171 Hydrogen bonds: I:G.25, I:T.27, I:T.27, I:T.27, I:F.29, I:L.30, I:L.94, I:G.96, I:Y.145, I:K.149, I:I.171, I:I.171 Salt bridges: I:R.50, I:R.97, I:R.97, I:R.177, I:R.177, C:R.156 pi-Stacking: I:F.104 pi-Cation interactions: I:R.50

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.12: 10 residues within 4Å: Chain L: R.34, F.35, C.36, Y.37, G.45, N.46, C.47, R.48, C.50, C.64 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.36, L:C.47, L:C.50, L:C.64 FES.15: 9 residues within 4Å: Chain N: C.103, T.105, P.107, C.108, C.144, L.145, G.146, A.147, C.148 4 PLIP interactions: 4 interactions with chain N, Metal complexes: N:C.103, N:C.108, N:C.144, N:C.148

1 x MG: MAGNESIUM ION(Non-covalent)

MG.13: 5 residues within 4Å: Chain L: Q.105, I.195, C.198, V.200, L.203 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:I.195, L:L.203

9 x CDL: CARDIOLIPIN(Non-covalent)(Covalent)

CDL.14: 15 residues within 4Å: Chain H: S.2, A.3, T.4, I.7 Chain M: L.2, V.5, R.8, G.9, Q.12, Y.22 Chain Q: M.1, W.2, F.3, L.6 Chain f: Y.43 6 PLIP interactions: 2 interactions with chain M, 1 interactions with chain f, 2 interactions with chain Q, 1 interactions with chain H Hydrophobic interactions: M:L.2, f:Y.43, Q:F.3, Q:L.6 Salt bridges: M:R.8 Hydrogen bonds: H:T.4 CDL.17: 20 residues within 4Å: Chain 6: L.153, M.157, L.160, I.164 Chain 9: M.576, V.577, Q.580, T.594, I.597, L.601, F.602 Chain T: T.31, I.34, V.35, Y.38, S.39, L.42, Y.58, S.62, F.69 16 PLIP interactions: 3 interactions with chain 6, 5 interactions with chain 9, 8 interactions with chain T Hydrophobic interactions: 6:L.153, 6:L.160, 6:I.164, 9:V.577, 9:I.597, 9:L.601, 9:F.602, T:I.34, T:I.34, T:V.35, T:Y.38, T:Y.38, T:L.42, T:F.69, T:F.69 Hydrogen bonds: 9:Q.580 CDL.20: 21 residues within 4Å: Chain 1: P.43, A.47, R.48 Chain 2: V.53, S.56, A.60, Y.61 Chain 9: T.13, N.65, F.80 Chain Y: A.34, T.38, N.41, E.46, H.66 Chain Z: W.79, I.80, Y.83, H.88 Ligands: PEE.21, PLX.35 15 PLIP interactions: 3 interactions with chain 1, 4 interactions with chain Y, 1 interactions with chain 9, 5 interactions with chain Z, 2 interactions with chain 2 Hydrophobic interactions: 1:P.43, 1:A.47, Y:A.34, 9:F.80, Z:W.79, Z:W.79, Z:I.80, Z:Y.83, 2:V.53 Hydrogen bonds: 1:R.48, Y:N.41, Y:E.46, 2:Y.61 Salt bridges: Y:H.66, Z:H.88 CDL.23: 21 residues within 4Å: Chain 6: I.4, Y.6, T.7, T.8, I.10, M.11, M.14, K.46, Q.125, L.128, L.129, T.132, W.133, I.209, L.213, M.217, K.321, M.323, L.325 Chain i: P.5, V.9 10 PLIP interactions: 10 interactions with chain 6 Hydrophobic interactions: 6:I.4, 6:L.128, 6:L.129, 6:W.133, 6:I.209, 6:L.325 Hydrogen bonds: 6:K.46, 6:Q.125 Salt bridges: 6:K.46, 6:K.321 CDL.28: 27 residues within 4Å: Chain 9: T.16, I.19, M.20, S.22, Y.27, L.78, R.116, K.119, Y.120, L.123, I.126, I.130, L.153 Chain Y: L.19 Ligands: PEE.21, PLX.35 Chain e: L.354, T.357, W.358, V.361, L.369, P.370, P.371, S.372, L.445, T.448, L.449 19 PLIP interactions: 9 interactions with chain e, 10 interactions with chain 9 Hydrophobic interactions: e:W.358, e:L.369, e:P.371, e:L.445, e:L.445, e:T.448, e:L.449, 9:T.16, 9:L.78, 9:L.78, 9:I.126, 9:I.130, 9:L.153 Hydrogen bonds: e:T.357, e:T.357, 9:Y.120 Salt bridges: 9:R.116, 9:K.119, 9:K.119 CDL.29: 17 residues within 4Å: Chain 0: F.109 Chain 9: L.286, I.293, T.294, L.410, I.414, S.417, L.418, A.421, R.425, V.493, M.496, L.504, P.516, S.517, T.519, Y.520 12 PLIP interactions: 1 interactions with chain 0, 11 interactions with chain 9 Hydrophobic interactions: 0:F.109, 9:L.286, 9:I.293, 9:L.410, 9:A.421, 9:V.493, 9:L.504, 9:T.519 Hydrogen bonds: 9:S.517, 9:S.517, 9:Y.520 Salt bridges: 9:R.425 CDL.32: 14 residues within 4Å: Chain 9: W.557, L.558, I.561 Chain T: Y.107 Chain c: P.81, T.82, P.83, S.86, L.87, G.89, A.90, G.93, I.94 Chain e: L.264 10 PLIP interactions: 1 interactions with chain e, 4 interactions with chain 9, 5 interactions with chain c Hydrophobic interactions: e:L.264, 9:W.557, 9:W.557, 9:L.558, 9:I.561, c:L.87, c:A.90, c:I.94, c:I.94 Hydrogen bonds: c:S.86 CDL.37: 32 residues within 4Å: Chain 4: C.41, L.44, I.45, A.48, V.54, V.55 Chain 6: P.238, V.239, S.242, L.243, M.245, V.246, T.334, L.335 Ligands: CDL.39 Chain e: M.10, L.12, P.13, W.16, M.17, T.90, R.91, L.94, T.97, M.98, L.101, L.104, F.105, V.127, I.131, R.135 Chain i: Y.304 24 PLIP interactions: 13 interactions with chain e, 6 interactions with chain 4, 4 interactions with chain 6, 1 interactions with chain i Hydrophobic interactions: e:L.12, e:P.13, e:W.16, e:W.16, e:L.94, e:T.97, e:L.101, e:L.101, e:L.104, e:F.105, e:V.127, e:I.131, 4:L.44, 4:I.45, 4:I.45, 4:A.48, 4:V.54, 6:L.243, 6:V.246, 6:T.334, 6:L.335 Hydrogen bonds: e:T.90, 4:V.54, i:Y.304 CDL.39: 17 residues within 4Å: Chain 4: T.28, R.31, V.33, Y.34, F.37 Chain 6: P.256 Ligands: CDL.37 Chain b: F.21, L.25, R.28 Chain e: L.2, I.6, T.9 Chain g: F.168, W.169, T.170, M.171 10 PLIP interactions: 4 interactions with chain g, 1 interactions with chain 6, 2 interactions with chain e, 2 interactions with chain b, 1 interactions with chain 4 Hydrophobic interactions: g:F.168, g:F.168, 6:P.256, e:L.2, e:I.6, b:L.25, 4:F.37 Hydrogen bonds: g:T.170, g:T.170 Salt bridges: b:R.28

1 x ZN: ZINC ION(Non-covalent)

ZN.16: 5 residues within 4Å: Chain R: C.59, G.61, H.68, C.84, C.87 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:C.59, R:H.68, R:C.84

1 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)

UQ.38: 15 residues within 4Å: Chain C: W.23, V.52 Ligands: PEE.25 Chain f: L.14, L.15, A.18, T.21, R.25, P.48, D.51, A.52, L.55, F.220, F.224, M.225 11 PLIP interactions: 10 interactions with chain f, 1 interactions with chain C Hydrophobic interactions: f:L.15, f:A.18, f:D.51, f:A.52, f:F.220, f:F.224, f:F.224, C:W.23 Hydrogen bonds: f:T.21, f:R.25 pi-Stacking: f:F.224

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.40: 17 residues within 4Å: Chain i: N.30, I.31, C.32, S.33, K.35, E.53, L.79, Y.83, L.96, Q.97, L.100, R.104, R.126, D.131, F.134, M.138, E.191 11 PLIP interactions: 11 interactions with chain i Hydrogen bonds: i:Y.83, i:Y.83, i:Q.97, i:Q.97, i:R.104, i:R.104, i:R.126, i:E.191 Salt bridges: i:K.35, i:K.35, i:R.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gu, J. et al., The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol. (2022)

Release Date

2022-03-02

Peptides

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,mitochondrial: C
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: D
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: E
Acyl carrier protein, mitochondrial: FV
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5: G
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7: H
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial: I
NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial: J
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: K
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: L
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: M
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: N
NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial: O
NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial: P
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: S
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: T
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13: U
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial: W
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3: X
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial: Y
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6: Z
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: 0
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: 1
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 2
NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial: 3
NADH dehydrogenase [ubiquinone] 1 subunit C2: 4
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 5
NADH-ubiquinone oxidoreductase chain 2: 6
NADH-ubiquinone oxidoreductase chain 3: 7
NADH-ubiquinone oxidoreductase chain 4L: 8
NADH-ubiquinone oxidoreductase chain 5: 9
NADH-ubiquinone oxidoreductase chain 6: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH-ubiquinone oxidoreductase chain 4: e
NADH-ubiquinone oxidoreductase chain 1: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: g
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
G

V
X

G
H

H
I

I
J

J
K

K
L

L
M

M
N

N
O

O
P

P
Q

Q
S

R
T

S
U

T
V

U
W

W
Y

X
Z

Y
a

Z
b

0
c

1
d

2
e

3
f

4
g

5
h

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Membrane

We predict this structure to be a membrane protein.
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NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7,mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 9, mitochondrial

NADH dehydrogenase [ubiquinone] flavoprotein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 3, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 5, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C1, mitochondrial

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH-ubiquinone oxidoreductase chain 2

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

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