SMTL ID : 7w2l.1

Deactive state CI from Rotenone-NADH dataset, Subclass 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-2-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

6 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.1: 12 residues within 4Å: Chain A: I.178, P.196, C.352, G.353, Q.354, C.355, C.358, T.396, I.397, C.398, L.400, G.401 4 PLIP interactions: 4 interactions with chain A, Metal complexes: A:C.352, A:C.355, A:C.358, A:C.398 SF4.4: 13 residues within 4Å: Chain B: C.77, I.78, A.79, C.80, K.81, C.83, I.94, Y.109, C.126, P.127, V.128, A.130, I.131 4 PLIP interactions: 4 interactions with chain B, Metal complexes: B:C.77, B:C.80, B:C.83, B:C.126 SF4.5: 12 residues within 4Å: Chain B: H.65, C.87, P.88, I.92, C.116, I.117, Y.118, C.119, G.120, F.121, C.122, E.133 5 PLIP interactions: 5 interactions with chain B, Salt bridges: B:E.133 Metal complexes: B:C.87, B:C.116, B:C.119, B:C.122 SF4.7: 10 residues within 4Å: Chain C: A.30, C.31, C.32, S.95, C.96, C.126, P.127 Chain P: R.85, R.105, H.190 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain P, Metal complexes: C:C.31, C:C.32, C:C.96, C:C.126, P:H.190 SF4.11: 13 residues within 4Å: Chain L: H.96, P.97, D.99, C.100, C.103, Q.105, G.106, C.109, L.111, Q.112, V.200, G.201 Chain P: I.346 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:H.96, L:C.100, L:C.103, L:C.109 SF4.12: 12 residues within 4Å: Chain L: C.148, I.149, Q.150, C.151, T.152, R.153, C.154, V.178, C.198, V.200, A.202, L.203 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.148, L:C.151, L:C.154, L:C.198

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.2: 20 residues within 4Å: Chain A: G.60, R.61, G.62, K.71, N.89, D.91, E.92, G.93, Y.177, I.178, G.180, E.181, E.182, V.215, A.216, N.217, T.220, A.399, L.400 Ligands: NAI.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.177, A:I.178, A:E.181, A:A.399, A:L.400 Hydrogen bonds: A:G.62, A:N.89, A:E.92, A:G.93, A:E.182, A:N.217, A:T.220 Salt bridges: A:K.71

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.3: 15 residues within 4Å: Chain A: G.62, G.63, A.64, F.66, K.71, F.74, G.93, E.94, Y.177, E.182, F.202, G.323, T.324, A.399 Ligands: FMN.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:E.94, A:Y.177, A:T.324 Hydrogen bonds: A:G.62, A:K.71, A:G.93, A:E.94, A:E.94, A:E.182 pi-Stacking: A:F.66, A:F.202

8 x PEE: 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine(Non-covalent)

PEE.6: 22 residues within 4Å: Chain B: T.24, L.25, W.27, L.30, L.34 Chain P: R.233 Chain S: I.24 Chain U: I.38, L.41 Chain f: P.180, M.183, M.184, F.186, P.197, T.238, I.273, Y.277, L.288, S.292, F.293, L.296, W.303 20 PLIP interactions: 9 interactions with chain f, 2 interactions with chain S, 2 interactions with chain P, 2 interactions with chain U, 5 interactions with chain B Hydrophobic interactions: f:F.186, f:F.186, f:P.197, f:T.238, f:I.273, f:Y.277, f:F.293, f:L.296, f:W.303, S:I.24, U:I.38, U:L.41, B:W.27, B:W.27, B:W.27, B:L.30, B:L.34 Hydrogen bonds: S:K.14 Salt bridges: P:R.233, P:R.233 PEE.16: 20 residues within 4Å: Chain 6: M.284, L.287, L.288, Y.291, R.295 Chain 9: L.562, P.563, T.566, S.567, Q.570 Chain P: Q.13, M.19, Y.20 Ligands: PEE.32 Chain e: N.144, L.147, Y.148, F.151, Y.152, A.155 16 PLIP interactions: 3 interactions with chain 9, 1 interactions with chain P, 6 interactions with chain 6, 6 interactions with chain e Hydrophobic interactions: 9:L.562, 9:P.563, 9:Q.570, 6:L.287, 6:Y.291, 6:Y.291, e:L.147, e:Y.148, e:F.151, e:F.151, e:F.151, e:Y.152 Hydrogen bonds: P:Q.13, 6:Y.291, 6:Y.291 Salt bridges: 6:R.295 PEE.18: 16 residues within 4Å: Chain 7: L.102, A.103, W.106 Chain S: F.7, L.8, E.15, L.18, V.19, S.21, F.22, A.23, G.25, G.26 Chain f: K.291, P.295, M.302 18 PLIP interactions: 5 interactions with chain 7, 11 interactions with chain S, 2 interactions with chain f Hydrophobic interactions: 7:L.102, 7:A.103, 7:W.106, 7:W.106, S:F.7, S:L.8, S:L.18, S:L.18, S:V.19, S:V.19, S:F.22, S:F.22, S:F.22, S:F.22, S:A.23, f:P.295 Hydrogen bonds: 7:W.106 Salt bridges: f:K.291 PEE.25: 11 residues within 4Å: Chain 7: L.27, N.28, A.29 Chain C: L.10, V.14, L.150, W.153, R.156 Chain I: D.55 Chain f: L.53, T.57 10 PLIP interactions: 1 interactions with chain I, 6 interactions with chain C, 2 interactions with chain f, 1 interactions with chain 7 Hydrogen bonds: I:D.55 Hydrophobic interactions: C:L.10, C:L.10, C:L.150, C:W.153, C:W.153, f:L.53, f:T.57, 7:L.27 Salt bridges: C:R.156 PEE.29: 16 residues within 4Å: Chain 0: N.85, R.86 Chain 9: T.166, Q.170, L.173, L.217, L.218, G.228, L.229, M.533, H.534, P.537, T.538, N.541 Chain e: M.401, L.405 12 PLIP interactions: 1 interactions with chain e, 1 interactions with chain 0, 10 interactions with chain 9 Hydrophobic interactions: e:L.405, 0:R.86, 9:L.173, 9:L.217, 9:L.218, 9:L.229, 9:P.537, 9:T.538, 9:N.541 Hydrogen bonds: 9:Q.170 Salt bridges: 9:H.534, 9:H.534 PEE.30: 15 residues within 4Å: Chain 9: W.66, H.67, W.68, S.77, L.78, N.136, I.142 Chain Z: I.80, Y.84, H.88 Ligands: CDL.20, CDL.27, PLX.33 Chain e: P.371, L.449 12 PLIP interactions: 3 interactions with chain Z, 7 interactions with chain 9, 2 interactions with chain e Hydrophobic interactions: Z:I.80, Z:Y.84, 9:W.66, 9:W.66, 9:W.66, 9:W.68, 9:W.68, 9:W.68, 9:L.78, e:P.371, e:L.449 Salt bridges: Z:H.88 PEE.31: 24 residues within 4Å: Chain 7: I.3, M.4, L.7 Chain Q: A.39 Chain U: F.138, I.139, W.140, Y.141, T.142 Chain a: I.34, V.35, G.38, G.42, L.45, N.46, S.50, L.54, F.57 Chain f: M.98, N.99, L.100, F.104, M.108, L.111 13 PLIP interactions: 5 interactions with chain a, 3 interactions with chain f, 4 interactions with chain 7, 1 interactions with chain U Hydrophobic interactions: a:I.34, a:F.57, a:F.57, f:L.111, 7:I.3, 7:I.3, 7:L.7, 7:L.7 Hydrogen bonds: a:S.50, a:S.50, f:N.99, f:L.100, U:F.138 PEE.32: 20 residues within 4Å: Chain 6: I.276, I.277 Chain 9: L.562 Chain T: L.123, E.130, G.131, W.132 Ligands: PEE.16 Chain e: A.155, P.159, A.163, Y.166, S.191, F.194, M.195, L.197, A.198, M.201, V.205, L.212 16 PLIP interactions: 5 interactions with chain T, 10 interactions with chain e, 1 interactions with chain 9 Hydrophobic interactions: T:L.123, T:L.123, T:W.132, T:W.132, e:P.159, e:A.163, e:F.194, e:F.194, e:L.197, e:L.197, e:M.201, e:V.205, e:L.212, 9:L.562 Hydrogen bonds: T:E.130, e:Y.166

2 x 8Q1: S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate(Covalent)

8Q1.8: 21 residues within 4Å: Chain D: M.12, K.16, V.19, L.22, W.26, K.49, V.50, M.53, F.54, M.55, N.57, A.58, V.60, V.66, L.69, G.73, E.76, F.93 Chain F: D.43, S.44, L.45 16 PLIP interactions: 14 interactions with chain D, 2 interactions with chain F Hydrophobic interactions: D:L.22, D:W.26, D:W.26, D:K.49, D:V.50, D:M.53, D:F.54, D:V.66, D:F.93, D:F.93 Hydrogen bonds: D:K.16, D:N.57, D:A.58, F:S.44, F:L.45 Salt bridges: D:K.16 8Q1.19: 17 residues within 4Å: Chain V: D.43, S.44, L.45 Chain d: Q.12, A.22, M.43, R.46, F.47, H.50, K.51, E.53, A.59, L.62, A.66, E.69, F.70, G.73 9 PLIP interactions: 7 interactions with chain d, 2 interactions with chain V Hydrophobic interactions: d:A.22, d:F.47, d:F.47, d:E.53, d:A.66, d:E.69 Hydrogen bonds: d:A.59, V:S.44, V:L.45

7 x CDL: CARDIOLIPIN(Non-covalent)

CDL.9: 18 residues within 4Å: Chain H: S.2, A.3, T.4, V.6, I.7 Chain M: L.2, V.5, L.6, R.8, G.9, Q.12, Y.22 Chain Q: M.1, W.2, F.3, L.6, P.7 Chain f: Y.43 10 PLIP interactions: 4 interactions with chain Q, 4 interactions with chain M, 2 interactions with chain H Hydrophobic interactions: Q:F.3, Q:F.3, Q:L.6, Q:P.7, M:L.2, H:V.6 Hydrogen bonds: M:G.9, M:Y.22, H:T.4 Salt bridges: M:R.8 CDL.20: 29 residues within 4Å: Chain 1: P.43, A.47, R.48, H.55 Chain 2: L.52, V.53, S.56, T.57, A.60, Y.61 Chain 9: T.13, N.65, F.80 Chain Y: L.27, G.30, I.37, T.38, N.41, V.42, H.66 Chain Z: W.79, I.80, I.81, Y.83, Y.84, H.88 Ligands: PEE.30, PLX.33 Chain e: L.446 22 PLIP interactions: 8 interactions with chain Z, 4 interactions with chain Y, 4 interactions with chain 1, 1 interactions with chain e, 1 interactions with chain 9, 4 interactions with chain 2 Hydrophobic interactions: Z:W.79, Z:W.79, Z:I.80, Z:I.81, Z:Y.83, Z:Y.83, Z:Y.84, Y:L.27, Y:I.37, 1:P.43, 1:A.47, e:L.446, 9:F.80, 2:V.53, 2:T.57, 2:A.60 Salt bridges: Z:H.88, Y:H.66, 1:H.55 Hydrogen bonds: Y:N.41, 1:R.48, 2:Y.61 CDL.23: 25 residues within 4Å: Chain 4: T.28, P.30, R.31, V.33, Y.34, F.37 Chain 6: P.256, L.335, P.338 Ligands: CDL.34 Chain b: F.21, L.25, R.28, S.29, K.32 Chain e: I.5, I.6, T.9, T.55, F.56, M.108 Chain g: F.168, W.169, T.170, M.171 18 PLIP interactions: 4 interactions with chain e, 3 interactions with chain g, 3 interactions with chain 4, 2 interactions with chain 6, 6 interactions with chain b Hydrophobic interactions: e:I.5, e:I.6, e:T.55, e:F.56, g:F.168, 4:V.33, 4:Y.34, 4:F.37, 6:L.335, 6:P.338, b:F.21, b:L.25 Hydrogen bonds: g:T.170, g:T.170, b:L.25, b:K.32 Salt bridges: b:R.28, b:K.32 CDL.24: 19 residues within 4Å: Chain 6: P.3, Y.6, T.7, T.8, I.10, M.11, M.14, K.46, Q.125, L.128, L.129, T.132, W.133, L.136, L.213, M.217, L.325 Chain i: P.5, V.9 10 PLIP interactions: 10 interactions with chain 6 Hydrophobic interactions: 6:Y.6, 6:L.128, 6:L.129, 6:W.133, 6:L.136, 6:L.213, 6:L.325 Hydrogen bonds: 6:Y.6, 6:Q.125 Salt bridges: 6:K.46 CDL.27: 29 residues within 4Å: Chain 9: I.19, S.22, N.23, Y.27, L.78, R.116, K.119, Y.120, L.123, I.126, T.127, I.130, I.142, G.146, M.150, L.153 Chain Y: L.19 Ligands: PEE.30, PLX.33 Chain e: L.354, T.357, W.358, L.360, V.361, L.369, P.370, P.371, S.372, L.445 18 PLIP interactions: 6 interactions with chain e, 12 interactions with chain 9 Hydrophobic interactions: e:W.358, e:V.361, e:V.361, e:L.369, e:L.445, 9:I.19, 9:L.123, 9:I.126, 9:T.127, 9:I.130, 9:I.142, 9:L.153 Hydrogen bonds: e:T.357, 9:Y.120 Salt bridges: 9:R.116, 9:K.119, 9:K.119, 9:K.119 CDL.28: 19 residues within 4Å: Chain 0: F.106, F.109 Chain 9: L.286, L.290, I.293, T.294, L.410, M.411, L.413, I.414, S.417, L.418, A.421, R.425, L.500, L.504, S.517, T.519, Y.520 16 PLIP interactions: 14 interactions with chain 9, 2 interactions with chain 0 Hydrophobic interactions: 9:L.286, 9:L.290, 9:I.293, 9:L.410, 9:L.413, 9:I.414, 9:A.421, 9:L.500, 9:L.504, 9:T.519, 0:F.106, 0:F.109 Hydrogen bonds: 9:S.517, 9:S.517, 9:Y.520 Salt bridges: 9:R.425 CDL.34: 35 residues within 4Å: Chain 4: F.37, C.41, L.44, I.45, A.48, V.54, V.55 Chain 6: P.238, V.239, S.242, L.243, M.245, V.246, T.334, L.335 Ligands: CDL.23 Chain b: W.10, L.14 Chain e: M.10, L.12, P.13, W.16, M.17, T.90, R.91, L.94, T.97, M.98, L.101, L.104, F.105, V.127, I.131, R.135 Chain i: Y.304 23 PLIP interactions: 5 interactions with chain 6, 9 interactions with chain e, 6 interactions with chain 4, 2 interactions with chain b, 1 interactions with chain i Hydrophobic interactions: 6:L.243, 6:V.246, 6:T.334, 6:L.335, 6:L.335, e:L.12, e:W.16, e:W.16, e:L.94, e:T.97, e:F.105, e:F.105, e:I.131, 4:F.37, 4:L.44, 4:I.45, 4:A.48, 4:V.54, b:W.10, b:L.14 Hydrogen bonds: e:T.90, 4:V.54, i:Y.304

1 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.10: 23 residues within 4Å: Chain C: R.156 Chain I: G.25, T.27, G.28, F.29, L.30, R.50, C.51, W.73, L.94, V.95, G.96, R.97, F.104, F.110, I.132, S.133, Y.145, K.149, P.168, D.170, I.171, R.177 23 PLIP interactions: 22 interactions with chain I, 1 interactions with chain C Hydrophobic interactions: I:P.168, I:I.171 Hydrogen bonds: I:G.25, I:T.27, I:F.29, I:L.30, I:R.50, I:C.51, I:L.94, I:G.96, I:R.97, I:Y.145, I:K.149, I:I.171, I:I.171, I:R.177 Salt bridges: I:R.50, I:R.97, I:R.97, I:R.177, C:R.156 pi-Cation interactions: I:R.50, I:R.50

2 x FES: FE2/S2 (INORGANIC) CLUSTER(Non-covalent)

FES.13: 8 residues within 4Å: Chain L: R.34, C.36, Y.37, G.45, C.47, R.48, C.50, C.64 4 PLIP interactions: 4 interactions with chain L, Metal complexes: L:C.36, L:C.47, L:C.50, L:C.64 FES.15: 9 residues within 4Å: Chain N: C.103, T.105, P.107, C.108, C.144, L.145, G.146, A.147, C.148 4 PLIP interactions: 4 interactions with chain N, Metal complexes: N:C.103, N:C.108, N:C.144, N:C.148

1 x MG: MAGNESIUM ION(Non-covalent)

MG.14: 5 residues within 4Å: Chain L: Q.105, I.195, C.198, V.200, L.203 2 PLIP interactions: 2 interactions with chain L Metal complexes: L:V.200, L:L.203

1 x ZN: ZINC ION(Non-covalent)

ZN.17: 5 residues within 4Å: Chain R: C.59, G.61, H.68, C.84, C.87 3 PLIP interactions: 3 interactions with chain R Metal complexes: R:C.59, R:H.68, R:C.84

4 x PLX: (9R,11S)-9-({[(1S)-1-HYDROXYHEXADECYL]OXY}METHYL)-2,2-DIMETHYL-5,7,10-TRIOXA-2LAMBDA~5~-AZA-6LAMBDA~5~-PHOSPHAOCTACOSANE-6,6,11-TRIOL(Non-covalent)

PLX.21: 16 residues within 4Å: Chain 2: F.45, I.50, T.57, F.58 Chain Y: I.68, R.74, T.75, F.76, Y.77, D.78 Chain b: F.19, C.23, R.27 Chain e: K.3, L.36, S.40 10 PLIP interactions: 5 interactions with chain 2, 1 interactions with chain b, 3 interactions with chain Y, 1 interactions with chain e Hydrophobic interactions: 2:F.45, 2:I.50, 2:F.58, 2:F.58, 2:F.58, Y:I.68, Y:F.76, e:L.36 Salt bridges: b:R.27, Y:D.78 PLX.22: 21 residues within 4Å: Chain 4: S.4, R.9, P.11, L.12, F.14, F.72, L.76, R.79 Chain 5: P.1, F.2, F.3 Chain 6: I.202, L.203, L.206, T.210, L.332, M.339, A.342, S.345, L.346, N.347 13 PLIP interactions: 7 interactions with chain 6, 6 interactions with chain 4 Hydrophobic interactions: 6:L.203, 6:L.206, 6:L.332, 6:M.339, 6:A.342, 6:N.347, 4:F.14, 4:F.14, 4:F.72, 4:L.76 Hydrogen bonds: 6:L.346 Salt bridges: 4:R.9, 4:R.79 PLX.26: 10 residues within 4Å: Chain 5: L.13 Chain 7: N.83, T.86, F.93 Chain a: S.148, Y.149, T.151, W.152, I.155, W.159 8 PLIP interactions: 4 interactions with chain a, 3 interactions with chain 7, 1 interactions with chain 5 Hydrophobic interactions: a:W.152, a:I.155, a:W.159, 7:F.93, 5:L.13 pi-Cation interactions: a:Y.149 Hydrogen bonds: 7:N.83, 7:T.86 PLX.33: 19 residues within 4Å: Chain 2: S.56, V.59, A.60, Y.61 Chain 9: I.19, M.20, N.23, W.66 Chain Y: H.66 Ligands: CDL.20, CDL.27, PEE.30 Chain e: L.39, V.67, L.68, W.71, L.446, L.447, N.450 10 PLIP interactions: 1 interactions with chain 2, 8 interactions with chain e, 1 interactions with chain 9 Hydrophobic interactions: 2:V.59, e:L.39, e:V.67, e:L.68, e:W.71, e:W.71, e:L.447, e:N.450, 9:N.23 Hydrogen bonds: e:N.450

1 x UQ: Coenzyme Q10, (2Z,6E,10Z,14E,18E,22E,26Z)-isomer(Non-covalent)

UQ.35: 10 residues within 4Å: Chain C: W.23 Chain f: A.18, T.21, R.25, D.51, A.52, L.55, F.220, F.224, M.225 10 PLIP interactions: 9 interactions with chain f, 1 interactions with chain C Hydrophobic interactions: f:A.18, f:D.51, f:L.55, f:F.220, f:F.224, f:F.224, C:W.23 Hydrogen bonds: f:T.21, f:R.25 pi-Stacking: f:F.224

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.36: 13 residues within 4Å: Chain i: I.31, C.32, K.35, E.53, L.79, Y.83, Q.97, L.100, R.104, R.126, D.131, F.134, E.191 12 PLIP interactions: 12 interactions with chain i Hydrogen bonds: i:C.32, i:Y.83, i:Q.97, i:Q.97, i:R.104, i:R.104, i:R.126, i:E.191 Salt bridges: i:K.35, i:R.126 pi-Stacking: i:F.134, i:F.134

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gu, J. et al., The coupling mechanism of mammalian mitochondrial complex I. Nat.Struct.Mol.Biol. (2022)

Release Date

2023-02-01

Peptides

NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial: A
NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial: B
NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial: C
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6: D
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2: E
Acyl carrier protein: FV
Complex I subunit B13: G
Complex I-B14.5a: H
NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial: I
Complex I-9kD: J
NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial: K
NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial: L
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12: M
NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial: N
Complex I-30kD: O
Complex I-49kD: P
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1: Q
NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial: R
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3: S
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11: T
Complex I-B16.6: U
Complex I-AGGG: W
Complex I-B12: X
Complex I-SGDH: Y
Complex I-B17: Z
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial: 0
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10: 1
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial: 2
Complex I-KFYI: 3
NADH dehydrogenase [ubiquinone] 1 subunit C2: 4
NADH dehydrogenase [ubiquinone] iron-sulfur protein 5: 5
NADH-ubiquinone oxidoreductase chain 2: 6
NADH-ubiquinone oxidoreductase chain 3: 7
NADH-ubiquinone oxidoreductase chain 4L: 8
NADH-ubiquinone oxidoreductase chain 5: 9
NADH-ubiquinone oxidoreductase chain 6: a
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1: b
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4: c
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9: d
NADH-ubiquinone oxidoreductase chain 4: e
NADH-ubiquinone oxidoreductase chain 1: f
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8: g
NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7: h
NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial: i

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
E

E
F

F
G

V
X

G
H

H
I

I
J

J
K

K
L

L
M

M
N

N
O

O
P

P
Q

Q
S

R
T

S
U

T
V

U
W

W
Y

X
Z

Y
a

Z
b

0
c

1
d

2
e

3
f

4
g

5
h

6
i

7
j

8
k

9
l

a
m

b
n

c
o

d
p

e
r

f
s

g
u

h
v

i
w

Membrane

We predict this structure to be a membrane protein.
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NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial

NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 6

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2

Acyl carrier protein

Complex I subunit B13

Complex I-B14.5a

NADH dehydrogenase ubiquinone 1 alpha subcomplex subunit 9, mitochondrial

Complex I-9kD

NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial

NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12

NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial

Complex I-30kD

Complex I-49kD

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1

NADH dehydrogenase [ubiquinone] iron-sulfur protein 6, mitochondrial

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 3

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11

Complex I-B16.6

Complex I-AGGG

Complex I-B12

Complex I-SGDH

Complex I-B17

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 11, mitochondrial

Complex I-KFYI

NADH dehydrogenase [ubiquinone] 1 subunit C2

NADH dehydrogenase [ubiquinone] iron-sulfur protein 5

NADH-ubiquinone oxidoreductase chain 2

NADH-ubiquinone oxidoreductase chain 3

NADH-ubiquinone oxidoreductase chain 4L

NADH-ubiquinone oxidoreductase chain 5

NADH-ubiquinone oxidoreductase chain 6

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 1

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9

NADH-ubiquinone oxidoreductase chain 4

NADH-ubiquinone oxidoreductase chain 1

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8

NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial

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