SMTL ID : 7vkg.1

Crystal structure of AF9 YEATS domain in complex with Compound 10

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.83 Å

Oligo State

monomer

Ligands

1 x 7IV: ~{N}-(4-chlorophenyl)-2-phenylmethoxy-ethanamide(Non-covalent)

7IV.1: 10 residues within 4Å: Chain A: F.28, H.56, S.58, F.59, P.60, G.77, Y.78, A.79, G.80, F.81 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.28, A:F.28, A:F.59, A:P.60, A:A.79, A:F.81 Hydrogen bonds: A:S.58, A:S.58, A:Y.78, A:A.79 pi-Stacking: A:H.56

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 3 residues within 4Å: Chain A: F.100, D.101, R.118 Ligand excluded by PLIP

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: C.5, R.132 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.5, A:C.5 EDO.4: 4 residues within 4Å: Chain A: V.65, C.66, K.67, D.68 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.67, A:K.67, A:D.68 EDO.5: 2 residues within 4Å: Chain A: F.35, R.37 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.37 EDO.6: 4 residues within 4Å: Chain A: R.16, Q.18, D.31, M.33 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Y. et al., Fragment-Based Discovery of AF9 YEATS Domain Inhibitors. Int J Mol Sci (2022)

Release Date

2022-10-05

Peptides

Protein AF-9: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Protein AF-9

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