SMTL ID : 7xhy.1

Crystal structure of MerTK Kinase domain with BMS794833

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.16 Å

Oligo State

monomer

Ligands

1 x E0X: ~{N}-[4-(2-azanyl-3-chloranyl-pyridin-4-yl)oxy-3-fluoranyl-phenyl]-5-(4-fluorophenyl)-4-oxidanylidene-1~{H}-pyridine-3-carboxamide(Non-covalent)

E0X.1: 19 residues within 4Å: Chain A: V.35, A.51, K.53, M.75, I.84, V.103, L.105, P.106, F.107, M.108, L.148, F.153, H.155, M.164, V.173, A.174, D.175, F.176 Ligands: DMS.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.51, A:I.84, A:L.105, A:F.153, A:D.175, A:F.176 Hydrogen bonds: A:K.53, A:M.108, A:M.108, A:D.175 Water bridges: A:K.53

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.235, P.236, L.253, K.254 Ligand excluded by PLIP CL.3: 1 residues within 4Å: Chain A: R.252 Ligand excluded by PLIP CL.4: 3 residues within 4Å: Chain A: F.107, M.108, D.167 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: T.46, S.47 Ligand excluded by PLIP

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.6: 7 residues within 4Å: Chain A: L.27, F.107, M.108, K.109, Y.110, G.111 Ligands: E0X.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bae, S.H. et al., BMS794833 inhibits macrophage efferocytosis by directly binding to MERTK and inhibiting its activity. Exp.Mol.Med. (2022)

Release Date

2022-11-30

Peptides

Tyrosine-protein kinase Mer: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase Mer

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