SMTL ID : 7y9z.1

Cryo-EM structure of SARS-CoV-2 Omicron spike protein (S-6P-RRAR) in complex with human ACE2 ectodomain (one-RBD-up state)

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-3-1-mer
Ligands
22 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
23 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)
1 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Zhao, Z. et al., Omicron SARS-CoV-2 mutations stabilize spike up-RBD conformation and lead to a non-RBM-binding monoclonal antibody escape. Nat Commun (2022)
Release Date
2022-09-21
Peptides
Spike glycoprotein: ABC
Processed angiotensin-converting enzyme 2: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
C
D
D

Spike glycoprotein

Toggle Identical (AC)

Processed angiotensin-converting enzyme 2

Related Entries With Identical Sequence

6lzg.1 | 7drv.1 | 7drv.2 | 7lo4.1 | 7pki.1 | 7wbl.1 | 7wbp.1 | 7wbq.1 | 7wbq.2 | 7xaz.1 | 7xaz.2 | 7xb0.1 | 7xb1.1 | 7xch.1 | 7xci.1 | 7xcp.1 | 7ya0.1 | 7ya1.1 | 7yhw.1 | 7yj3.1 | 8h06.1 | 8h5c.1 | 8hfx.1