SMTL ID : 7drv.1 (1 other biounit)

Structural basis of SARS-CoV-2-closely-related bat coronavirus RaTG13 to hACE2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.09 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 3 residues within 4Å: Chain A: K.8, N.72, T.74 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: Q.63, Q.83, N.85, V.89 No protein-ligand interaction detected (PLIP)

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 5 residues within 4Å: Chain A: N.35, E.39, N.40, V.321, Q.322 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.321, A:Q.322 Hydrogen bonds: A:E.39, A:N.40 NAG.4: 1 residues within 4Å: Chain A: N.304 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.304 NAG.6: 4 residues within 4Å: Chain A: S.402, D.525, S.527, N.528 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.402, A:S.402, A:N.528 NAG.7: 3 residues within 4Å: Chain B: F.20, G.21, N.25 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:F.20 Hydrogen bonds: B:N.25

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 4 residues within 4Å: Chain A: H.356, E.357, H.360, E.384 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.356, A:E.357, A:H.360, A:E.384

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, K. et al., Binding and molecular basis of the bat coronavirus RaTG13 virus to ACE2 in humans and other species. Cell (2021)

Release Date

2021-08-25

Peptides

Angiotensin-converting enzyme 2: A
Spike glycoprotein: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Angiotensin-converting enzyme 2

Spike glycoprotein

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