SMTL ID : 7yxc.1

Crystal structure of WT AncGR2-LBD bound to dexamethasone and SHP coregulator fragment

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

hetero-1-1-mer

Ligands

1 x DEX: DEXAMETHASONE(Non-covalent)

DEX.1: 18 residues within 4Å: Chain A: M.32, L.35, N.36, G.39, Q.42, W.72, M.73, M.76, R.83, F.95, Q.114, M.118, L.204, F.207, C.208, T.211, V.219, F.221 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.35, A:W.72, A:M.76, A:Q.114 Hydrogen bonds: A:N.36, A:Q.42, A:R.83 Water bridges: A:R.83

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.2: 10 residues within 4Å: Chain A: E.12, P.13, E.14, V.15, M.76, S.79, W.82, R.83, Y.135 Ligands: CO3.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.79, A:S.79, A:R.83

2 x CO3: CARBONATE ION(Non-functional Binders)

CO3.3: 6 residues within 4Å: Chain A: E.12, P.13, A.46, W.49, K.139 Ligands: PG4.2 No protein-ligand interaction detected (PLIP) CO3.4: 2 residues within 4Å: Chain A: G.55, T.164 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jimenez-Panizo, A. et al., The multivalency of the glucocorticoid receptor ligand-binding domain explains its manifold physiological activities. Nucleic Acids Res. (2022)

Release Date

2022-12-07

Peptides

Ancestral Glucocorticoid Receptor2: A
SHP NR Box 1 Peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
R

Ancestral Glucocorticoid Receptor2

SHP NR Box 1 Peptide

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