SMTL ID : 7zb1.2 (3 other biounits)

S580A with 18mer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

hetero-1-1-mer

Ligands

4 x NA: SODIUM ION(Non-functional Binders)

NA.1: 6 residues within 4Å: Chain A: G.500, G.501, G.544, M.545, K.549, E.624 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.549, A:E.624 NA.2: 6 residues within 4Å: Chain A: Y.499, G.500, K.549, V.552, N.581, L.585 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.549, A:N.581, A:N.581, A:L.585 NA.3: 5 residues within 4Å: Chain A: F.262, S.281, R.282, D.283, S.620 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:F.262 NA.4: 7 residues within 4Å: Chain A: N.337, Y.338, E.358, D.359, A.362, L.364, Y.379 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.338, A:D.359, A:L.364

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matabaro, E. et al., Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides. Biorxiv (2022)

Release Date

2022-07-06

Peptides

Prolyl endopeptidase: A
18mer: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
F

Prolyl endopeptidase

18mer

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