SMTL ID : 7zb2.4 (7 other biounits)

apo macrocyclase OphP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.499, F.502, A.580, N.581, I.606, W.621 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.499, A:Y.499, A:N.581, A:W.621

2 x NA: SODIUM ION(Non-functional Binders)

NA.2: 6 residues within 4Å: Chain A: H.370, G.413, R.414, D.417, D.419, I.420 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.370 NA.3: 6 residues within 4Å: Chain A: Y.174, V.175, R.194, M.195, N.196, D.197 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.175, A:V.175, A:R.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matabaro, E. et al., Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides. Biorxiv (2022)

Release Date

2022-07-06

Peptides

OphP S580A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
DDD

OphP S580A

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