SMTL ID : 7zb2.6 (7 other biounits)

apo macrocyclase OphP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.94 Å

Oligo State

monomer

Ligands

1 x THR: THREONINE(Non-covalent)

THR.1: 2 residues within 4Å: Chain A: M.729, Q.730 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Ligand interactions Hydrogen bonds: A:M.729, T.1, T.1

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 7 residues within 4Å: Chain A: Y.499, F.502, A.580, N.581, I.606, W.621, R.667 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.581, A:W.621

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: N.529, I.530, E.535 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.530, A:E.535, H2O.1, H2O.3

2 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: Y.499, G.500, K.549, V.552, N.581, L.585 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.500, A:K.549, A:N.581, A:L.585 NA.5: 6 residues within 4Å: Chain A: F.427, F.479, I.480, T.481, Y.525, I.527 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.479, A:T.481, A:T.481

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matabaro, E. et al., Molecular basis for the enzymatic macrocyclization of multiply backbone N-methylated peptides. Biorxiv (2022)

Release Date

2022-07-06

Peptides

OphP S580A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
FFF

OphP S580A

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