SMTL ID : 7zg1.1

BRD4 in complex with PepLite-Tyr

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

1 x T9J: Nalpha-acetyl-N-(3-bromoprop-2-yn-1-yl)-L-tyrosinamide(Non-covalent)

T9J.1: 8 residues within 4Å: Chain A: W.42, P.43, F.44, L.53, L.55, Y.100, N.101, I.107 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.42, A:P.43, A:F.44, A:L.53, A:L.55, A:Y.100, A:I.107, A:I.107 Hydrogen bonds: A:N.101 Water bridges: A:D.106, A:I.107

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain A: I.61, I.62, K.63, T.64, T.95, N.96, I.99 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.61, A:K.63, A:T.64, A:T.95

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Davison, G. et al., Mapping Ligand Interactions of Bromodomains BRD4 and ATAD2 with FragLites and PepLites─Halogenated Probes of Druglike and Peptide-like Molecular Interactions. J.Med.Chem. (2022)

Release Date

2022-11-23

Peptides

Bromodomain-containing protein 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
AAA

Bromodomain-containing protein 4

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