SMTL ID : 8b9t.1

Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 2 residues within 4Å: Ligands: EPE.4, EPE.5 No protein-ligand interaction detected (PLIP)

4 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.2: 1 residues within 4Å: Ligands: EPE.5 No protein-ligand interaction detected (PLIP) EPE.3: 3 residues within 4Å: Chain A: L.87 Ligands: EPE.4, IPA.6 No protein-ligand interaction detected (PLIP) EPE.4: 8 residues within 4Å: Chain A: N.66, R.84, P.85, C.86, L.87, E.88 Ligands: NA.1, EPE.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.87, A:E.88 Water bridges: A:R.84 EPE.5: 5 residues within 4Å: Chain A: G.67, Q.68, R.84 Ligands: NA.1, EPE.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.84 Salt bridges: A:R.84

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.6: 2 residues within 4Å: Chain A: E.88 Ligands: EPE.3 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stewart, B.Z. et al., Crystal structure of Scribble PDZ1 with human papillomavirus strain 16 E6 peptide. To Be Published

Release Date

2023-10-18

Peptides

Protein scribble homolog: A
Protein E6: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein scribble homolog

Protein E6

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