SMTL ID : 8bcw.1

Photosystem I assembly intermediate of Avena sativa

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-mer

Ligands

2 x CL0: CHLOROPHYLL A ISOMER(Non-covalent)

CL0.1: 23 residues within 4Å: Chain A: Y.453, Y.598, N.599, S.602, V.603, F.606, I.641, W.644, L.649, A.653, I.657, F.671, H.675, W.678, Y.730, T.737, T.738, F.741 Chain B: L.620, W.625 Ligands: CLA.3, CLA.54, CLA.60 17 PLIP interactions: 16 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:V.603, A:F.606, A:I.641, A:W.644, A:W.644, A:W.644, A:L.649, A:L.649, A:A.653, A:I.657, A:F.671, A:W.678, A:T.737, A:F.741, B:L.620 pi-Stacking: A:F.671 Metal complexes: A:H.675 CL0.107: 7 residues within 4Å: Chain F: N.32, Q.35, F.38, F.39 Chain H: L.103 Ligands: CLA.110, BCR.114 3 PLIP interactions: 1 interactions with chain H, 2 interactions with chain F, Hydrophobic interactions: H:L.103, F:F.38, F:F.39

86 x CLA: CHLOROPHYLL A(Non-covalent)

CLA.2: 24 residues within 4Å: Chain A: F.676, A.679, F.680, L.682, M.683, F.686, Y.691, W.692, L.695 Chain B: S.423, S.426, L.427, G.430, F.431, L.434, L.525, L.532, I.533, L.578, F.581, W.582 Ligands: CLA.42, BCR.52, CLA.54 14 PLIP interactions: 8 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:F.676, A:A.679, A:F.680, A:L.682, A:F.686, A:Y.691, A:W.692, B:F.431, B:L.434, B:I.533, B:L.578, B:F.581 pi-Stacking: A:F.680, B:W.582 CLA.3: 21 residues within 4Å: Chain A: F.450, I.454, F.539, F.595, W.596, N.599, I.641, Y.730 Chain B: W.648, L.651, F.652, H.654, L.655, W.657, A.658 Ligands: CL0.1, CLA.60, CLA.61, CLA.67, CLA.68, BCR.102 12 PLIP interactions: 6 interactions with chain A, 5 interactions with chain B, 1 Ligand-Water interactions Hydrophobic interactions: A:F.450, A:I.454, A:I.454, A:F.539, A:W.596, A:W.596, B:W.648, B:W.648, B:L.655, B:L.655, B:A.658 Metal complexes: H2O.4 CLA.4: 8 residues within 4Å: Chain A: F.32, I.46, L.49, H.50 Ligands: CLA.5, CLA.12, PQN.44, CLA.56 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:F.32, A:I.46, A:L.49 Metal complexes: A:H.50 CLA.5: 14 residues within 4Å: Chain A: H.31, L.49, A.53, H.54, F.56, H.59, A.73, I.80 Ligands: CLA.4, CLA.6, CLA.7, CLA.12, CLA.31, LHG.46 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:A.53, A:F.56, A:I.80 Metal complexes: A:H.54 CLA.6: 22 residues within 4Å: Chain A: H.54, F.56, V.70, A.73, H.74, Q.77, I.81, F.82, L.85, W.346, H.347, L.350, N.353, L.354 Ligands: CLA.5, CLA.7, CLA.14, CLA.15, CLA.26, CLA.31, BCR.48, BCR.49 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:F.56, A:V.70, A:A.73, A:Q.77, A:I.81, A:F.82, A:L.85, A:W.346, A:L.350, A:L.350 Hydrogen bonds: A:N.353 Metal complexes: A:H.74 CLA.7: 12 residues within 4Å: Chain A: H.54, Q.77, I.80, I.81, W.84 Ligands: CLA.5, CLA.6, CLA.9, CLA.30, CLA.31, LHG.46, BCR.49 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.80, A:I.81, A:I.81, A:W.84 Salt bridges: A:H.54 CLA.8: 9 residues within 4Å: Chain A: L.83, W.84, G.87, F.90, H.91, F.95, V.114, W.116 Ligands: CLA.10 4 PLIP interactions: 4 interactions with chain A, Hydrophobic interactions: A:L.83, A:F.90 pi-Stacking: A:F.95 Metal complexes: A:H.91 CLA.9: 18 residues within 4Å: Chain A: I.80, L.83, W.84, M.88, A.112, Q.113, I.135, Q.136, I.137, T.138, S.139, Y.667, F.670, W.739 Ligands: CLA.7, CLA.10, CLA.12, CLA.29 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:I.80, A:I.135, A:Y.667, A:Y.667, A:F.670, A:W.739 Hydrogen bonds: A:T.138, A:S.139, A:S.139 CLA.10: 13 residues within 4Å: Chain A: Q.113, V.114, V.115, W.116, I.118, Q.121, L.124, F.670 Ligands: CLA.8, CLA.9, CLA.29, CLA.54, CLA.91 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:V.115, A:W.116, A:I.118, A:L.124, A:F.670 Hydrogen bonds: A:Q.113, A:W.116, A:Q.121 CLA.11: 11 residues within 4Å: Chain A: F.75, L.169, M.170, F.172, A.173, F.176, H.177, A.181, P.183 Ligands: CLA.13, CLA.14 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:F.75, A:F.172, A:A.173, A:F.176, A:P.183 Metal complexes: A:H.177 CLA.12: 12 residues within 4Å: Chain A: K.69, S.72, I.80, L.171, G.174, W.175, Y.178, H.179 Ligands: CLA.4, CLA.5, CLA.9, CLA.29 6 PLIP interactions: 6 interactions with chain A, Hydrophobic interactions: A:I.80, A:W.175 Hydrogen bonds: A:Y.178 Salt bridges: A:K.69 pi-Stacking: A:Y.178 Metal complexes: A:H.179 CLA.13: 11 residues within 4Å: Chain A: W.187, D.190, S.193, H.197, T.311, N.312, W.313 Ligands: CLA.11, CLA.14, CLA.21, BCR.49 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:W.313 Hydrogen bonds: A:S.193 Metal complexes: A:H.197 CLA.14: 18 residues within 4Å: Chain A: F.71, H.74, F.75, L.78, F.82, F.166, M.170, W.187, D.190, M.194, H.197, H.198, G.201 Ligands: CLA.6, CLA.11, CLA.13, CLA.26, CLA.30 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:F.82, A:F.166, A:W.187, A:W.187, A:M.194, A:H.197 Hydrogen bonds: A:H.74 Salt bridges: A:H.74 Metal complexes: A:H.198 CLA.15: 20 residues within 4Å: Chain A: S.148, G.149, I.150, Q.155, C.158, T.159, G.162, G.206, S.209, W.210, G.212, H.213, H.216, V.217, P.237, I.241 Ligands: CLA.6, CLA.17, BCR.48, BCR.49 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:W.210, A:H.213, A:H.216, A:V.217, A:I.241 pi-Stacking: A:W.210 Metal complexes: A:H.213 CLA.16: 13 residues within 4Å: Chain A: L.208, S.209, G.212, I.215, H.216, F.240, I.241, R.244, G.257, A.258, F.261, Y.269 Ligands: BCR.48 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:I.215, A:I.241, A:A.258, A:F.261, A:F.261 Salt bridges: A:H.216, A:R.244 Metal complexes: A:H.216 CLA.17: 7 residues within 4Å: Chain A: Q.155, C.158, L.236, H.238, L.242 Ligands: CLA.15, BCR.48 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:Q.155, A:H.238, A:L.242 pi-Stacking: A:H.238 Metal complexes: H2O.1 CLA.18: 14 residues within 4Å: Chain A: W.266, S.267, Y.269, A.270, L.273, T.274, F.275, H.293, L.296, A.297, I.300 Ligands: CLA.19, CLA.37, LMU.57 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:W.266, A:W.266, A:W.266, A:W.266, A:L.273, A:L.296, A:L.296, A:A.297, A:I.300 pi-Stacking: A:W.266 Metal complexes: A:H.293 CLA.19: 17 residues within 4Å: Chain A: T.274, F.275, G.277, L.286, H.293, H.294, A.297, I.298, L.301, H.367, M.371, T.503 Ligands: CLA.18, CLA.20, CLA.28, CLA.36, CLA.37 11 PLIP interactions: 11 interactions with chain A, Hydrophobic interactions: A:F.275, A:F.275, A:F.275, A:F.275, A:H.294, A:A.297, A:I.298, A:L.301, A:T.503 Hydrogen bonds: A:H.367 Metal complexes: A:H.294 CLA.20: 23 residues within 4Å: Chain A: L.144, A.147, L.203, G.206, S.207, W.210, Q.214, I.291, H.294, H.295, I.298, F.302, V.363, V.364, H.367, M.368, P.373, Y.374 Ligands: CLA.19, CLA.28, CLA.30, CLA.36, BCR.49 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:W.210, A:W.210, A:I.298, A:F.302, A:V.363, A:V.364, A:P.373 Hydrogen bonds: A:Q.214 pi-Stacking: A:H.294 Metal complexes: A:H.295 CLA.21: 11 residues within 4Å: Chain A: N.196, H.197, A.200, L.205, L.303, H.307, Y.309, T.311, W.313, I.315 Ligands: CLA.13 9 PLIP interactions: 9 interactions with chain A, Hydrophobic interactions: A:N.196, A:L.205, A:L.303, A:W.313, A:I.315 Hydrogen bonds: A:N.196, A:T.311 Water bridges: A:W.313 Metal complexes: A:H.307 CLA.22: 23 residues within 4Å: Chain A: L.195, L.199, L.203, L.301, F.302, A.305, M.308, Y.309, L.319, I.322, L.352, M.356, L.424, L.553 Ligands: CLA.23, CLA.24, CLA.25, CLA.26, CLA.28, CLA.32, BCR.50, BCR.51, LMG.58 9 PLIP interactions: 8 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:L.195, A:L.203, A:L.301, A:F.302, A:A.305, A:L.352, A:L.424, A:L.553 Metal complexes: H2O.3 CLA.23: 9 residues within 4Å: Chain A: M.308, H.317, A.325, H.326 Ligands: CLA.22, CLA.24, CLA.25, CLA.36, CLA.45 1 PLIP interactions: 1 interactions with chain A, Metal complexes: A:H.326 CLA.24: 9 residues within 4Å: Chain A: I.304, H.307, M.308, I.315, G.316, H.317 Ligands: CLA.22, CLA.23, LMG.58 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:I.304, A:M.308 Hydrogen bonds: A:G.316 Salt bridges: A:H.317 Metal complexes: A:H.317 CLA.25: 17 residues within 4Å: Chain A: I.322, L.323, H.326, H.335, L.338, N.421, L.423 Ligands: CLA.22, CLA.23, CLA.26, CLA.32, CLA.36, CLA.40, CLA.45, LHG.47, BCR.50, BCR.51 5 PLIP interactions: 5 interactions with chain A, Hydrophobic interactions: A:L.338, A:L.338, A:L.423 Salt bridges: A:H.326 Metal complexes: A:H.335 CLA.26: 23 residues within 4Å: Chain A: L.63, S.67, H.74, F.188, V.191, M.194, L.195, H.198, L.199, L.342, T.343, S.345, W.346, L.352, N.353, M.356 Ligands: CLA.6, CLA.14, CLA.22, CLA.25, CLA.28, CLA.30, BCR.50 13 PLIP interactions: 12 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:L.63, A:V.191, A:M.194, A:L.195, A:L.195, A:L.195, A:L.342, A:L.342, A:W.346, A:L.352, A:N.353, A:M.356 Metal complexes: H2O.3 CLA.27: 13 residues within 4Å: Chain A: I.362, V.363, H.366, I.399, I.541, T.544, V.545, A.600 Ligands: CLA.28, CLA.38, CLA.39, CLA.40, BCR.51 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:I.362, A:I.362, A:I.399, A:T.544, A:A.600 Salt bridges: A:H.366 Metal complexes: H2O.5 CLA.28: 18 residues within 4Å: Chain A: S.359, T.360, V.363, H.367, S.370, M.371, S.504, T.506, W.507 Ligands: CLA.19, CLA.20, CLA.22, CLA.26, CLA.27, CLA.36, CLA.38, BCR.51, LMG.58 2 PLIP interactions: 2 interactions with chain A, Hydrophobic interactions: A:W.507 Metal complexes: A:H.367 CLA.29: 16 residues within 4Å: Chain A: W.84, M.88, T.138, S.139, F.141, S.386, T.389, H.390, W.393, I.735, W.739 Ligands: CLA.9, CLA.10, CLA.12, CLA.30, BCR.52 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:T.389, A:H.390, A:W.393, A:I.735, A:W.739 pi-Stacking: A:H.390, A:W.739 Metal complexes: A:H.390 CLA.30: 19 residues within 4Å: Chain A: L.85, S.139, G.140, F.141, L.203, L.357, T.361, V.364, M.368, Y.374, L.387, H.390, H.391 Ligands: CLA.7, CLA.14, CLA.20, CLA.26, CLA.29, BCR.49 8 PLIP interactions: 8 interactions with chain A, Hydrophobic interactions: A:F.141, A:L.203, A:L.357, A:V.364, A:L.387 Hydrogen bonds: A:Y.374 pi-Stacking: A:H.390 Metal complexes: A:H.391 CLA.31: 24 residues within 4Å: Chain A: H.50, A.51, A.53, H.54, D.55, H.347, L.350, L.354, F.397, G.401, A.404, H.405, I.408, R.412, F.569, R.570, W.587, L.732 Ligands: CLA.5, CLA.6, CLA.7, CLA.42, LHG.46, BCR.52 12 PLIP interactions: 12 interactions with chain A, Hydrophobic interactions: A:L.350, A:L.350, A:L.354, A:A.404, A:L.732 Hydrogen bonds: A:A.53, A:H.54, A:R.570 Salt bridges: A:H.54, A:R.412, A:R.570 Metal complexes: A:H.405 CLA.32: 13 residues within 4Å: Chain A: L.423, R.426, V.427, H.430, I.434, H.437 Chain H: V.56, T.70, P.71 Ligands: CLA.22, CLA.25, CLA.33, LHG.47 7 PLIP interactions: 6 interactions with chain A, 1 interactions with chain H, Hydrophobic interactions: A:L.423, A:I.434, A:H.437, H:T.70 Hydrogen bonds: A:R.426 Salt bridges: A:H.430 Metal complexes: A:H.430 CLA.33: 19 residues within 4Å: Chain A: A.433, H.437, W.440 Chain B: A.681, R.684, T.685, P.686 Chain F: Y.23 Chain H: T.70, V.72, T.73, V.78 Ligands: CLA.32, CLA.39, CLA.43, LHG.47, BCR.109, CLA.111, BCR.114 9 PLIP interactions: 2 interactions with chain A, 4 interactions with chain H, 2 interactions with chain B, 1 interactions with chain F, Hydrophobic interactions: A:W.440, H:V.72, H:V.72, H:T.73, B:R.684, B:T.685 Metal complexes: A:H.437 Hydrogen bonds: H:T.70, F:Y.23 CLA.34: 15 residues within 4Å: Chain A: W.440, I.443, F.444, F.447, H.448 Ligands: CLA.35, CLA.39, CLA.43, CLA.61, CLA.96, PQN.98, BCR.102, BCR.108, BCR.109, BCR.113 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:F.447 pi-Stacking: A:F.444 Metal complexes: A:H.448 CLA.35: 24 residues within 4Å: Chain A: F.447, H.448, G.451, L.452, I.454, H.455, M.459, R.464, D.467, F.469 Chain H: P.112, F.113, T.116, G.117, P.118, R.120 Ligands: CLA.34, CLA.67, CLA.68, BCR.108, BCR.109, CLA.111, CLA.112, BCR.114 13 PLIP interactions: 9 interactions with chain A, 4 interactions with chain H, Hydrophobic interactions: A:L.452, A:I.454, A:H.455, A:F.469, H:P.112, H:F.113 Hydrogen bonds: A:R.464, A:R.464, H:T.116 Salt bridges: A:H.455, A:R.464, H:R.120 Metal complexes: A:H.455 CLA.36: 16 residues within 4Å: Chain A: I.487, H.488, A.491, T.495, A.496, T.503 Ligands: CLA.19, CLA.20, CLA.23, CLA.25, CLA.28, CLA.37, CLA.38, CLA.40, CLA.45, BCR.51 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:I.487, A:T.495 Metal complexes: A:H.488 CLA.37: 10 residues within 4Å: Chain A: F.275, V.494, T.495, A.496, P.497, G.498 Ligands: CLA.18, CLA.19, CLA.36, BCR.51 3 PLIP interactions: 3 interactions with chain A, Hydrophobic interactions: A:P.497 Hydrogen bonds: A:G.498 Metal complexes: A:T.495 CLA.38: 17 residues within 4Å: Chain A: H.366, Y.369, F.480, A.481, V.484, Q.485, W.507, H.534, H.537, V.604, H.607, F.608 Ligands: CLA.27, CLA.28, CLA.36, CLA.39, CLA.40 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:Y.369, A:F.480, A:H.537, A:V.604, A:F.608 Hydrogen bonds: A:Q.485 Metal complexes: A:H.534 CLA.39: 19 residues within 4Å: Chain A: V.441, F.444, L.445, Q.477, P.478, I.479, F.480, A.481, F.531, H.534, H.535, H.542 Ligands: CLA.27, CLA.33, CLA.34, CLA.38, CLA.40, BCR.109, CLA.111 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:V.441, A:F.444, A:L.445, A:F.480, A:F.480 Hydrogen bonds: A:F.480, A:A.481 Salt bridges: A:H.534 pi-Stacking: A:F.531 Metal complexes: A:H.535 CLA.40: 12 residues within 4Å: Chain A: I.434, L.438, V.441, A.538, I.541, H.542 Ligands: CLA.25, CLA.27, CLA.36, CLA.38, CLA.39, BCR.50 7 PLIP interactions: 7 interactions with chain A, Hydrophobic interactions: A:I.434, A:L.438, A:L.438, A:V.441, A:I.541 Salt bridges: A:H.542 Metal complexes: A:H.542 CLA.41: 11 residues within 4Å: Chain A: I.699, A.702, H.703, L.706 Chain B: S.420, S.423, W.424, L.427 Ligands: CLA.56, CLA.89, CLA.90 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain B, Hydrophobic interactions: A:I.699, A:L.706, B:L.427 Salt bridges: A:H.703 Metal complexes: A:H.703 CLA.42: 14 residues within 4Å: Chain A: W.47, V.677, F.680, F.684, Q.721, V.725, T.728, H.729, L.732 Ligands: CLA.2, CLA.31, PQN.44, LHG.46, BCR.52 10 PLIP interactions: 10 interactions with chain A, Hydrophobic interactions: A:W.47, A:V.677, A:F.680, A:F.684, A:V.725, A:T.728, A:L.732 Hydrogen bonds: A:Q.721 Salt bridges: A:H.729 Metal complexes: A:H.729 CLA.43: 19 residues within 4Å: Chain A: S.436, N.439, W.440, I.443 Chain B: L.678, A.681, H.682, T.685, A.688, I.691 Chain H: H.105, L.140 Ligands: CLA.33, CLA.34, CLA.96, CLA.97, BCR.102, CLA.111, BCR.113 10 PLIP interactions: 6 interactions with chain B, 2 interactions with chain H, 1 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: B:L.678, B:T.685, B:A.688, B:I.691, H:L.140, H:L.140, A:I.443 Water bridges: B:H.682 pi-Stacking: B:H.682 Metal complexes: H2O.4 CLA.45: 8 residues within 4Å: Chain A: K.327, G.328, P.329 Ligands: CLA.23, CLA.25, CLA.36, LHG.47, BCR.50 1 PLIP interactions: 1 interactions with chain A, Hydrophobic interactions: A:K.327 CLA.54: 20 residues within 4Å: Chain A: L.669, L.672, G.673, H.675, F.676, W.678, A.679 Chain B: V.438, V.442, F.581, W.582, N.585, W.589, L.616, L.620 Ligands: CL0.1, CLA.2, CLA.10, BCR.52, CLA.60 13 PLIP interactions: 6 interactions with chain A, 6 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: A:L.669, A:L.672, A:L.672, A:F.676, A:A.679, B:V.438, B:V.442, B:W.582, B:W.582, B:N.585 Salt bridges: A:H.675 pi-Stacking: B:W.589 Metal complexes: H2O.7 CLA.56: 13 residues within 4Å: Chain A: T.43, W.47, I.699, V.700, H.703, V.708, P.710, A.711, P.714, R.715 Ligands: CLA.4, CLA.41, PQN.44 11 PLIP interactions: 10 interactions with chain A, 1 Ligand-Water interactions, Hydrophobic interactions: A:T.43, A:W.47, A:I.699, A:V.700, A:P.710, A:P.710, A:P.714, A:P.714 Hydrogen bonds: A:A.711 Water bridges: A:T.712 Metal complexes: H2O.3 CLA.60: 22 residues within 4Å: Chain A: L.645, L.649, W.650 Chain B: Y.437, A.522, L.525, W.589, F.592, W.619, L.624, S.628, I.632, F.650, H.654, W.657, Y.717, T.720, Y.721, F.724 Ligands: CL0.1, CLA.3, CLA.54 22 PLIP interactions: 20 interactions with chain B, 2 interactions with chain A, Hydrophobic interactions: B:Y.437, B:A.522, B:L.525, B:W.589, B:W.589, B:F.592, B:F.592, B:W.619, B:W.619, B:L.624, B:I.632, B:F.650, B:W.657, B:W.657, B:W.657, B:W.657, B:Y.717, B:F.724, A:L.645, A:L.649 pi-Stacking: B:F.650 Metal complexes: B:H.654 CLA.61: 21 residues within 4Å: Chain A: N.439, I.443, G.446, F.450, I.454, F.539, L.546, I.547, L.592, F.595, W.596 Chain B: A.658, T.659, F.661, M.662, Y.670, W.671 Ligands: CLA.3, CLA.34, CLA.97, BCR.102 13 PLIP interactions: 7 interactions with chain A, 6 interactions with chain B, Hydrophobic interactions: A:F.450, A:I.454, A:I.547, A:L.592, A:F.595, B:A.658, B:F.661, B:M.662, B:Y.670, B:W.671 pi-Stacking: A:W.596, A:W.596 Hydrogen bonds: B:Y.670 CLA.62: 13 residues within 4Å: Chain B: F.8, I.25, A.28, H.29, F.31, H.34, S.49, I.56 Ligands: CLA.64, CLA.87, DGD.103, LHG.104, BCR.113 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:I.25, B:A.28, B:F.31, B:I.56 Metal complexes: B:H.29 CLA.63: 22 residues within 4Å: Chain B: H.29, F.31, Y.43, I.46, S.49, H.50, Q.53, L.54, I.57, R.174, H.178, L.182, I.330, H.331, Q.333, L.334, A.337, L.338 Ligands: CLA.64, CLA.71, CLA.82, CLA.87 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:F.31, B:Y.43, B:I.46, B:I.46, B:I.46, B:L.182, B:I.330, B:L.334 pi-Stacking: B:H.50 Metal complexes: B:H.50 CLA.64: 16 residues within 4Å: Chain B: H.29, Q.53, I.56, I.57, W.60, L.341, F.381, I.382 Ligands: CLA.62, CLA.63, CLA.66, CLA.85, CLA.86, CLA.87, BCR.99, DGD.103 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.56, B:I.57, B:W.60, B:W.60, B:W.60, B:L.341, B:F.381, B:I.382 Salt bridges: B:H.29 CLA.65: 21 residues within 4Å: Chain B: L.59, W.60, G.63, F.66, H.67, W.70, Q.71, H.89, A.90, W.92, T.147, L.150 Chain G: L.3, P.4, F.7, V.8, V.11 Ligands: CLA.66, CLA.67, LHG.104, BCR.108 9 PLIP interactions: 7 interactions with chain B, 2 interactions with chain G, Hydrophobic interactions: B:L.59, B:L.59, B:W.70, B:L.150, G:F.7, G:F.7 Hydrogen bonds: B:Q.71 Salt bridges: B:H.67 Metal complexes: B:H.67 CLA.66: 19 residues within 4Å: Chain B: W.60, N.64, V.68, A.88, H.89, N.114, I.115, A.116, Y.117, S.118, V.645, W.646, M.649 Ligands: CLA.64, CLA.65, CLA.67, CLA.85, BCR.102, BCR.108 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:A.88, B:Y.117, B:V.645, B:W.646 Hydrogen bonds: B:Y.117, B:S.118, B:S.118 Metal complexes: B:H.89 CLA.67: 27 residues within 4Å: Chain A: T.458, A.461, L.462 Chain B: H.89, I.91, W.92, D.93, H.95, F.96, N.114, S.644, V.645, W.648 Chain G: V.8, A.19, M.20 Ligands: CLA.3, CLA.35, CLA.65, CLA.66, CLA.68, CLA.87, CLA.97, BCR.102, DGD.103, BCR.108, BCR.113 11 PLIP interactions: 2 interactions with chain G, 6 interactions with chain B, 3 interactions with chain A, Hydrophobic interactions: G:V.8, G:A.19, B:I.91, B:F.96, B:V.645, A:T.458, A:L.462, A:L.462 Hydrogen bonds: B:W.92, B:N.114 Metal complexes: B:D.93 CLA.68: 22 residues within 4Å: Chain B: P.94, H.95 Chain F: L.57, G.60, G.61, L.64, V.67, L.76 Chain G: L.13, A.17 Chain H: P.118, L.119, A.128, L.131, G.135, T.138 Ligands: CLA.3, CLA.35, CLA.67, CLA.96, BCR.108, BCR.109 11 PLIP interactions: 3 interactions with chain H, 3 interactions with chain F, 2 interactions with chain B, 3 interactions with chain G, Hydrophobic interactions: H:A.128, H:L.131, H:T.138, F:L.64, F:V.67, F:L.76, B:P.94, G:L.13, G:L.13, G:A.17 Metal complexes: B:H.95 CLA.69: 11 residues within 4Å: Chain B: F.47, F.51, A.152, L.155, H.156, W.161, P.163, W.167 Ligands: CLA.70, CLA.71, BCR.99 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:F.47, B:F.51, B:A.152, B:P.163, B:W.167 Metal complexes: B:H.156 CLA.70: 10 residues within 4Å: Chain B: W.167, N.170, S.173, H.177, T.293, N.294 Ligands: CLA.69, CLA.71, CLA.78, BCR.99 2 PLIP interactions: 2 interactions with chain B, Hydrogen bonds: B:S.173 Metal complexes: B:H.177 CLA.71: 21 residues within 4Å: Chain B: F.47, H.50, F.51, L.54, W.123, W.167, N.170, R.174, H.177, H.178, G.181, L.182, F.183, Y.358 Ligands: CLA.63, CLA.69, CLA.70, CLA.76, CLA.82, CLA.86, BCR.99 14 PLIP interactions: 14 interactions with chain B, Hydrophobic interactions: B:F.47, B:W.123, B:W.167, B:W.167, B:W.167, B:R.174, B:R.174, B:H.177, B:L.182, B:L.182, B:F.183, B:F.183 Salt bridges: B:H.50 Metal complexes: B:H.178 CLA.72: 22 residues within 4Å: Chain B: F.58, I.127, G.128, L.129, F.141, L.145, L.148, S.149, S.186, A.189, W.190, G.192, H.193, H.196, V.197, R.208, W.209, F.212 Ligands: CLA.73, CLA.86, BCR.99, BCR.100 18 PLIP interactions: 18 interactions with chain B, Hydrophobic interactions: B:F.58, B:I.127, B:L.145, B:L.148, B:A.189, B:W.190, B:W.190, B:H.193, B:H.196, B:V.197, B:W.209, B:W.209, B:F.212 Hydrogen bonds: B:W.209 Salt bridges: B:R.208 pi-Stacking: B:W.190, B:W.209 Metal complexes: B:H.193 CLA.73: 18 residues within 4Å: Chain B: L.188, A.189, T.191, G.192, H.196, F.212, L.213, V.215, L.216, P.217, G.221, L.222, L.225, L.278, F.282 Ligands: CLA.72, CLA.74, BCR.100 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:T.191, B:F.212, B:L.213, B:P.217, B:L.222, B:L.225, B:L.278, B:F.282 Metal complexes: B:H.196 CLA.74: 11 residues within 4Å: Chain B: W.230, N.231, Y.233, L.255, L.257, H.275, L.278, A.279, F.282 Ligands: CLA.73, CLA.75 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:W.230, B:Y.233, B:L.255, B:L.278, B:A.279, B:F.282, B:F.282 Metal complexes: B:H.275 CLA.75: 14 residues within 4Å: Chain B: T.256, L.257, D.272, H.275, H.276, I.280, I.283, H.351, L.355, W.493, W.497 Ligands: CLA.74, CLA.76, CLA.84 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:I.280, B:I.283, B:W.493 Metal complexes: B:H.276 CLA.76: 22 residues within 4Å: Chain B: W.123, T.126, F.183, S.186, S.187, W.190, I.273, H.276, H.277, I.280, L.347, V.348, H.351, M.352, A.357, Y.358 Ligands: CLA.71, CLA.75, CLA.82, CLA.84, CLA.86, CLA.92 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:F.183, B:W.190, B:W.190, B:I.280, B:L.347, B:V.348 pi-Stacking: B:W.190, B:H.276 Metal complexes: B:H.277 CLA.77: 13 residues within 4Å: Chain B: L.175, L.179, F.284, A.287, M.290, Y.291, I.301, L.304 Ligands: CLA.79, CLA.80, CLA.81, CLA.82, CLA.84 6 PLIP interactions: 5 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:L.175, B:L.179, B:F.284, B:A.287 Hydrogen bonds: B:Y.291 Metal complexes: H2O.9 CLA.78: 11 residues within 4Å: Chain B: N.176, H.177, S.180, V.185, L.285, H.289, Y.291, T.293, F.295, I.297 Ligands: CLA.70 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:N.176, B:V.185, B:L.285 Hydrogen bonds: B:N.176 Metal complexes: B:H.289 CLA.79: 9 residues within 4Å: Chain B: I.286, H.289, M.290, R.292, I.297, G.298, H.299 Ligands: CLA.77, CLA.80 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:M.290 Hydrogen bonds: B:G.298 Salt bridges: B:H.299 Metal complexes: B:H.299 CLA.80: 7 residues within 4Å: Chain B: H.299, L.304, A.307, H.308 Ligands: CLA.77, CLA.79, CLA.81 3 PLIP interactions: 3 interactions with chain B, Hydrophobic interactions: B:L.304 Salt bridges: B:H.308 Metal complexes: B:H.308 CLA.81: 11 residues within 4Å: Chain B: L.305, H.308, L.315, H.319, L.322, V.407, L.408 Ligands: CLA.77, CLA.80, CLA.82, CLA.88 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:L.315, B:L.322, B:V.407, B:V.407, B:V.407, B:L.408 Salt bridges: B:H.308 Metal complexes: B:H.319 CLA.82: 19 residues within 4Å: Chain B: A.171, R.174, L.175, H.178, L.179, F.183, I.301, Y.323, I.326, L.336, A.337, S.340, I.344 Ligands: CLA.63, CLA.71, CLA.76, CLA.77, CLA.81, CLA.84 14 PLIP interactions: 13 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:A.171, B:L.175, B:L.175, B:L.175, B:F.183, B:I.301, B:Y.323, B:I.326, B:A.337, B:I.344 Hydrogen bonds: B:R.174, B:H.178 Salt bridges: B:H.178 Metal complexes: H2O.9 CLA.83: 17 residues within 4Å: Chain B: V.343, S.346, L.347, Q.350, Q.376, M.383, F.387, L.527, T.530, T.531, M.583, I.587 Ligands: CLA.84, CLA.92, CLA.93, CLA.95, BCR.101 8 PLIP interactions: 7 interactions with chain B, 1 Ligand-Water interactions, Hydrophobic interactions: B:M.383, B:F.387, B:T.530, B:T.531, B:I.587 Hydrogen bonds: B:Q.350, B:Q.376 Metal complexes: H2O.10 CLA.84: 17 residues within 4Å: Chain B: V.343, L.347, Q.350, H.351, Y.353, S.354, L.355, L.508, F.509 Ligands: CLA.75, CLA.76, CLA.77, CLA.82, CLA.83, CLA.92, CLA.93, BCR.101 6 PLIP interactions: 6 interactions with chain B, Hydrophobic interactions: B:V.343, B:L.355, B:L.508, B:F.509 pi-Stacking: B:H.351 Metal complexes: B:H.351 CLA.85: 16 residues within 4Å: Chain B: W.60, N.64, Y.117, S.118, A.370, T.373, H.374, Y.377, M.649, I.718, A.722, L.725 Ligands: CLA.64, CLA.66, CLA.86, CLA.87 8 PLIP interactions: 8 interactions with chain B, Hydrophobic interactions: B:A.370, B:T.373, B:H.374, B:Y.377, B:Y.377, B:A.722, B:L.725 Metal complexes: B:H.374 CLA.86: 24 residues within 4Å: Chain B: I.57, W.60, S.118, G.119, W.123, S.186, A.189, L.341, I.344, T.345, V.348, M.352, Y.358, L.371, H.374, H.375, I.378 Ligands: CLA.64, CLA.71, CLA.72, CLA.76, CLA.85, BCR.99, BCR.100 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:I.57, B:W.60, B:W.123, B:W.123, B:L.341, B:I.344, B:V.348, B:L.371, B:I.378 pi-Stacking: B:H.374 Metal complexes: B:H.375 CLA.87: 26 residues within 4Å: Chain B: I.25, A.26, T.27, A.28, H.29, D.30, L.334, F.381, T.384, G.385, H.389, I.392, R.396, Y.555, W.573, F.576, V.715, F.719 Ligands: CLA.62, CLA.63, CLA.64, CLA.67, CLA.85, CLA.97, BCR.102, DGD.103 11 PLIP interactions: 11 interactions with chain B, Hydrophobic interactions: B:I.25, B:L.334, B:L.334, B:F.576, B:F.576, B:F.576, B:V.715, B:F.719 Hydrogen bonds: B:H.29 Salt bridges: B:R.396 Metal complexes: B:H.389 CLA.88: 10 residues within 4Å: Chain B: R.314, L.315, V.407, R.410, H.414, I.418, H.421 Ligands: CLA.81, CLA.89, CLA.95 7 PLIP interactions: 7 interactions with chain B, Hydrophobic interactions: B:L.315, B:V.407, B:I.418 Hydrogen bonds: B:R.410 Salt bridges: B:R.410, B:H.414 Metal complexes: B:H.414 CLA.89: 8 residues within 4Å: Chain A: W.701, K.705, L.706 Chain B: A.417, H.421, W.424 Ligands: CLA.41, CLA.88 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B, Hydrophobic interactions: A:K.705, A:L.706, A:L.706, B:W.424 Metal complexes: B:H.421 CLA.90: 9 residues within 4Å: Chain B: W.424, L.427, F.428, F.431, H.432 Ligands: CLA.41, BCR.52, LMU.59, CLA.91 4 PLIP interactions: 4 interactions with chain B, Hydrophobic interactions: B:F.431 Salt bridges: B:H.432 pi-Stacking: B:F.428 Metal complexes: B:H.432 CLA.91: 12 residues within 4Å: Chain A: V.119 Chain B: H.432, G.435, L.436, V.438, H.439, M.443, K.451, I.453 Ligands: CLA.10, LMU.59, CLA.90 5 PLIP interactions: 1 interactions with chain A, 4 interactions with chain B, Hydrophobic interactions: A:V.119, B:V.438, B:H.439, B:I.453 Metal complexes: B:H.439 CLA.92: 9 residues within 4Å: Chain B: I.463, H.467, L.478, W.493, W.497 Ligands: CLA.76, CLA.83, CLA.84, BCR.101 2 PLIP interactions: 2 interactions with chain B, Hydrophobic interactions: B:I.463 Metal complexes: B:H.467 CLA.93: 20 residues within 4Å: Chain B: Q.350, Y.353, Y.372, F.459, A.460, I.463, Q.464, F.509, L.510, I.512, H.520, I.523, V.590, Y.593, W.594, H.598 Ligands: CLA.83, CLA.84, CLA.94, CLA.95 9 PLIP interactions: 9 interactions with chain B, Hydrophobic interactions: B:I.463, B:I.512, B:I.523, B:V.590, B:Y.593, B:Y.593, B:W.594 Hydrogen bonds: B:Q.464 Metal complexes: B:H.520 CLA.94: 12 residues within 4Å: Chain B: F.428, L.429, P.457, I.458, F.459, A.460, F.517, H.520, H.521, H.528 Ligands: CLA.93, CLA.95 10 PLIP interactions: 10 interactions with chain B, Hydrophobic interactions: B:F.428, B:F.428, B:L.429, B:I.458, B:F.459 Hydrogen bonds: B:F.459, B:A.460 Salt bridges: B:H.520 pi-Stacking: B:F.517 Metal complexes: B:H.521 CLA.95: 10 residues within 4Å: Chain B: I.418, L.422, A.524, L.527, H.528 Ligands: CLA.83, CLA.88, CLA.93, CLA.94, BCR.101 5 PLIP interactions: 5 interactions with chain B, Hydrophobic interactions: B:I.418, B:L.422, B:L.422 Salt bridges: B:H.528 Metal complexes: B:H.528 CLA.96: 22 residues within 4Å: Chain B: T.18, W.22, H.682, I.691, R.692, W.693, R.694, D.695, P.697, V.698 Chain G: L.13, F.24, Q.28 Chain H: I.139, Y.147, S.151 Ligands: CLA.34, CLA.43, CLA.68, PQN.98, BCR.108, BCR.113 11 PLIP interactions: 8 interactions with chain B, 1 interactions with chain H, 1 interactions with chain G, 1 Ligand-Water interactions, Hydrophobic interactions: B:T.18, B:W.22, B:W.693, B:W.693, B:P.697, B:P.697, H:I.139, G:F.24 Hydrogen bonds: B:R.694 Water bridges: B:D.695 Metal complexes: H2O.10 CLA.97: 23 residues within 4Å: Chain B: W.22, F.652, L.655, V.656, T.659, M.662, F.663, V.708, A.711, H.712 Chain G: A.17, M.20, T.21 Chain H: V.142, V.143 Ligands: CLA.43, CLA.61, CLA.67, CLA.87, PQN.98, BCR.102, DGD.103, BCR.113 10 PLIP interactions: 6 interactions with chain B, 2 interactions with chain H, 2 interactions with chain G, Hydrophobic interactions: B:F.652, B:L.655, B:V.656, B:T.659, H:V.142, H:V.143, G:A.17, G:M.20 Salt bridges: B:H.712 Metal complexes: B:H.712 CLA.110: 13 residues within 4Å: Chain F: P.30, Y.31, Q.35, F.39 Chain H: Y.81, N.84, R.89, E.100, L.103, A.104 Ligands: CL0.107, CLA.111, BCR.114 5 PLIP interactions: 3 interactions with chain F, 2 interactions with chain H, Hydrophobic interactions: F:P.30, F:Y.31, H:L.103 Hydrogen bonds: F:Q.35 Metal complexes: H:E.100 CLA.111: 15 residues within 4Å: Chain B: L.687 Chain H: Y.81, P.86, A.87, E.100, V.101, H.105, L.108 Ligands: CLA.33, CLA.35, CLA.39, CLA.43, BCR.109, CLA.110, BCR.113 5 PLIP interactions: 5 interactions with chain H, Hydrophobic interactions: H:A.87 Hydrogen bonds: H:Y.81, H:A.87 Salt bridges: H:H.105 Metal complexes: H:H.105 CLA.112: 11 residues within 4Å: Chain H: Y.107, G.111, P.112, L.115, L.202, L.203, Y.210, F.211, F.212 Ligands: CLA.35, BCR.114 8 PLIP interactions: 7 interactions with chain H, 1 Ligand-Water interactions, Hydrophobic interactions: H:Y.107, H:P.112, H:L.115, H:L.203, H:Y.210 Hydrogen bonds: H:F.211, H:F.212 Metal complexes: H2O.20

2 x PQN: PHYLLOQUINONE(Non-covalent)

PQN.44: 11 residues within 4Å: Chain A: M.683, F.684, S.687, R.689, W.692, A.716, L.717 Ligands: CLA.4, CLA.42, LHG.46, CLA.56 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.684, A:F.684, A:R.689, A:W.692, A:W.692, A:L.717 Hydrogen bonds: A:S.687, A:L.717 pi-Stacking: A:W.692 PQN.98: 16 residues within 4Å: Chain B: W.22, M.662, F.663, S.666, W.667, R.668, W.671, I.675, A.699, L.700, A.705 Ligands: CLA.34, CLA.96, CLA.97, DGD.103, BCR.113 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:W.22, B:F.663, B:R.668, B:W.671, B:W.671, B:W.671, B:I.675, B:A.705 Hydrogen bonds: B:L.700

3 x LHG: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE(Non-covalent)

LHG.46: 20 residues within 4Å: Chain A: N.48, H.50, A.51, D.52, F.397, R.570, W.587, S.718, I.720, Q.721, A.724, T.728, L.732, I.735 Ligands: CLA.5, CLA.7, CLA.31, CLA.42, PQN.44, BCR.52 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:A.51, A:F.397, A:F.397, A:L.732, A:I.735 Hydrogen bonds: A:D.52, A:R.570, A:S.718 Water bridges: A:N.48 Salt bridges: A:R.570, A:R.570 LHG.47: 9 residues within 4Å: Chain A: G.328, P.329, F.330, R.426 Ligands: CLA.25, CLA.32, CLA.33, CLA.45, BCR.50 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.426 LHG.104: 14 residues within 4Å: Chain B: E.2, R.7, F.8, H.34, R.41, A.48, G.52, I.56, L.59, L.150, L.157 Chain G: Y.26 Ligands: CLA.62, CLA.65 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.48, B:I.56, B:I.56, B:L.59, B:L.150, B:L.157 Hydrogen bonds: B:R.41 Salt bridges: B:R.7

13 x BCR: BETA-CAROTENE(Non-covalent)

BCR.48: 11 residues within 4Å: Chain A: F.82, L.85, T.159, A.163, L.205, S.209 Ligands: CLA.6, CLA.15, CLA.16, CLA.17, BCR.49 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.82, A:L.85, A:T.159, A:A.163, A:L.205 BCR.49: 10 residues within 4Å: Chain A: G.201, L.205, G.206 Ligands: CLA.6, CLA.7, CLA.13, CLA.15, CLA.20, CLA.30, BCR.48 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.205 BCR.50: 12 residues within 4Å: Chain A: A.348, S.351, L.352, A.406, F.409 Ligands: CLA.22, CLA.25, CLA.26, CLA.40, CLA.45, LHG.47, BCR.51 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.352, A:A.406, A:F.409, A:F.409 BCR.51: 14 residues within 4Å: Chain A: A.355, M.356, S.359, I.399, A.406, L.548, V.552 Ligands: CLA.22, CLA.25, CLA.27, CLA.28, CLA.36, CLA.37, BCR.50 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.355, A:I.399, A:A.406, A:L.548, A:V.552 BCR.52: 18 residues within 4Å: Chain A: G.673, A.674, F.676, V.677, L.732, I.735, A.736, W.739 Chain B: F.431, L.434 Ligands: CLA.2, CLA.29, CLA.31, CLA.42, LHG.46, CLA.54, LMU.59, CLA.90 8 PLIP interactions: 7 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:F.676, A:V.677, A:L.732, A:I.735, A:A.736, A:W.739, A:W.739, B:L.434 BCR.99: 9 residues within 4Å: Chain B: L.54, G.181, S.186 Ligands: CLA.64, CLA.69, CLA.70, CLA.71, CLA.72, CLA.86 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.54 BCR.100: 8 residues within 4Å: Chain B: L.65, W.124, G.138, F.141, L.142 Ligands: CLA.72, CLA.73, CLA.86 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:L.65, B:F.141, B:L.142 BCR.101: 14 residues within 4Å: Chain B: F.332, G.335, L.336, A.339, V.343, A.386, F.387, G.390, F.393, F.394 Ligands: CLA.83, CLA.84, CLA.92, CLA.95 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:F.332, B:F.332, B:L.336, B:V.343, B:A.386, B:F.387, B:F.387, B:F.387, B:F.393, B:F.394 BCR.102: 11 residues within 4Å: Chain B: W.648, F.652, W.671 Ligands: CLA.3, CLA.34, CLA.43, CLA.61, CLA.66, CLA.67, CLA.87, CLA.97 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.648, B:W.648, B:F.652, B:W.671 BCR.108: 13 residues within 4Å: Chain G: V.11, G.12, L.13, F.15, P.16 Ligands: CLA.34, CLA.35, CLA.65, CLA.66, CLA.67, CLA.68, CLA.96, BCR.109 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:V.11, G:L.13, G:F.15, G:P.16 BCR.109: 9 residues within 4Å: Chain B: L.687 Chain H: G.132 Ligands: CLA.33, CLA.34, CLA.35, CLA.39, CLA.68, BCR.108, CLA.111 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.687 BCR.113: 18 residues within 4Å: Chain B: I.25 Chain G: M.20, L.23, F.24 Chain H: L.140, V.143, L.144, M.146, Y.147, F.188 Ligands: CLA.34, CLA.43, CLA.62, CLA.67, CLA.96, CLA.97, PQN.98, CLA.111 12 PLIP interactions: 8 interactions with chain H, 2 interactions with chain G, 2 interactions with chain B Hydrophobic interactions: H:L.140, H:V.143, H:V.143, H:L.144, H:L.144, H:Y.147, H:F.188, H:F.188, G:L.23, G:F.24, B:I.25, B:I.25 BCR.114: 12 residues within 4Å: Chain H: Y.81, L.103, A.104, Y.107, S.194, I.197, W.198 Ligands: CLA.33, CLA.35, CL0.107, CLA.110, CLA.112 6 PLIP interactions: 6 interactions with chain H Hydrophobic interactions: H:L.103, H:Y.107, H:Y.107, H:I.197, H:W.198, H:W.198

3 x SF4: IRON/SULFUR CLUSTER(Non-covalent)

SF4.53: 10 residues within 4Å: Chain A: C.573, G.575, P.576, C.582, R.723 Chain B: C.559, G.561, P.562, C.568, R.706 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A, Metal complexes: B:C.559, B:C.568, A:C.573, A:C.582 SF4.105: 11 residues within 4Å: Chain C: C.21, P.22, T.23, V.25, C.48, V.49, G.50, C.51, K.52, C.54, V.67 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.21, C:C.48, C:C.51, C:C.54 SF4.106: 10 residues within 4Å: Chain C: C.11, I.12, G.13, C.14, T.15, C.17, C.58, P.59, S.64, V.65 4 PLIP interactions: 4 interactions with chain C, Metal complexes: C:C.11, C:C.14, C:C.17, C:C.58

3 x LMU: DODECYL-ALPHA-D-MALTOSIDE(Non-covalent)

LMU.55: 7 residues within 4Å: Chain A: V.115, W.116, P.117, I.118, N.125, F.132, R.133 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.116, A:W.116, A:I.118 Hydrogen bonds: A:N.125, A:R.133, A:R.133 Water bridges: A:E.122 LMU.57: 3 residues within 4Å: Chain A: W.266, I.300 Ligands: CLA.18 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.300 LMU.59: 4 residues within 4Å: Chain A: V.119 Ligands: BCR.52, CLA.90, CLA.91 No protein-ligand interaction detected (PLIP)

1 x LMG: 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE(Non-covalent)

LMG.58: 4 residues within 4Å: Chain A: H.307 Ligands: CLA.22, CLA.24, CLA.28 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:H.307

1 x DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)(Non-covalent)

DGD.103: 21 residues within 4Å: Chain B: S.9, G.11, W.22, F.23, A.26, T.27, S.33, W.573, V.703, Q.704, L.707, S.714, V.715, I.718 Chain C: P.71 Ligands: CLA.62, CLA.64, CLA.67, CLA.87, CLA.97, PQN.98 16 PLIP interactions: 15 interactions with chain B, 1 interactions with chain C Hydrophobic interactions: B:W.22, B:F.23, B:A.26, B:Q.704, B:L.707, B:L.707, B:V.715, B:I.718 Hydrogen bonds: B:S.9, B:S.33 Water bridges: B:G.11, B:R.19, B:R.19, B:S.556, B:S.556, C:E.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Naschberger, A. et al., Photosystem I assembly intermediate of Avena sativa. To Be Published

Release Date

2023-11-01

Peptides

Photosystem I P700 chlorophyll a apoprotein A1: A
Photosystem I P700 chlorophyll a apoprotein A2: B
Photosystem I iron-sulfur center: C
Photosystem I reaction center subunit II, chloroplastic: D
Photosystem I reaction center subunit IV A, chloroplastic: E
Photosystem I reaction center subunit VI, chloroplastic: F
Photosystem I reaction center subunit VIII: G
PSI subunit V: H

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
H

G
I

H
L

Membrane

We predict this structure to be a membrane protein.
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Photosystem I P700 chlorophyll a apoprotein A1

Photosystem I P700 chlorophyll a apoprotein A2

Photosystem I iron-sulfur center

Photosystem I reaction center subunit II, chloroplastic

Photosystem I reaction center subunit IV A, chloroplastic

Photosystem I reaction center subunit VI, chloroplastic

Photosystem I reaction center subunit VIII

PSI subunit V

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