SMTL ID : 8cf9.1

Crystal structure of the human PXR ligand-binding domain in complex with sclareol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

2 x UK6: sclareol(Non-covalent)

UK6.1: 10 residues within 4Å: Chain A: L.91, L.122, M.125, M.128, S.129, Q.167, F.170, Y.188, M.205, H.289 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.91, A:F.170, A:F.170, A:F.170, A:Y.188 UK6.3: 10 residues within 4Å: Chain B: L.91, L.122, M.125, M.128, S.129, Q.167, F.170, Y.188, M.205, H.289 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:L.91, B:F.170, B:F.170, B:F.170, B:Y.188

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: T.172, L.217, H.218, E.219 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.219 Water bridges: A:K.213 GOL.4: 4 residues within 4Å: Chain B: T.172, L.217, H.218, E.219 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.219 Water bridges: B:K.213

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carivenc, C. et al., Crystal structure of the human PXR ligand-binding domain in complex with sclareol. To Be Published

Release Date

2024-02-21

Peptides

Nuclear receptor subfamily 1 group I member 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Nuclear receptor subfamily 1 group I member 2

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