SMTL ID : 8chm.1

Human FKBP12 in complex with (1S,5S,6R)-10-((S)-(3,5-dichlorophenyl)sulfinyl)-3-(pyridin-2-ylmethyl)-5-vinyl-3,10-diazabicyclo[4.3.1]decan-2-one

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.12 Å

Oligo State

monomer

Ligands

1 x UT6: (1~{S},5~{S},6~{R})-10-[3,5-bis(chloranyl)phenyl]sulfinyl-5-ethenyl-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one(Non-covalent)

UT6.1: 14 residues within 4Å: Chain A: Y.26, F.36, D.37, F.46, E.54, V.55, I.56, W.59, Y.82, H.87, I.90, I.91, F.99 Ligands: DMS.2 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.26, A:D.37, A:F.46, A:F.46, A:W.59, A:W.59, A:I.90 Hydrogen bonds: A:I.56, A:Y.82

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 6 residues within 4Å: Chain A: Q.53, E.54, V.55, I.56, Y.82 Ligands: UT6.1 No protein-ligand interaction detected (PLIP)

2 x CD: CADMIUM ION(Non-covalent)

CD.3: 6 residues within 4Å: Chain A: F.48, M.49, E.54 Ligands: CL.6, CL.9, CL.10 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.54, A:E.54 CD.4: 3 residues within 4Å: Chain A: H.94 Ligands: CL.7, CL.8 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.94, H2O.5

6 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 5 residues within 4Å: Chain A: P.88, G.89, I.90, I.91, P.92 Ligand excluded by PLIP CL.6: 8 residues within 4Å: Chain A: T.21, K.47, F.48, M.49, E.54 Ligands: CD.3, CL.9, CL.10 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: H.94 Ligands: CD.4 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain A: P.78, H.94, T.96 Ligands: CD.4 Ligand excluded by PLIP CL.9: 5 residues within 4Å: Chain A: M.49, K.52, E.54 Ligands: CD.3, CL.6 Ligand excluded by PLIP CL.10: 5 residues within 4Å: Chain A: K.47, F.48, E.54 Ligands: CD.3, CL.6 Ligand excluded by PLIP

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.11: 2 residues within 4Å: Chain A: D.37, R.42 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.37 Water bridges: A:S.38, A:R.42, A:R.42, A:R.42 Salt bridges: A:R.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Purder, P.L. et al., Deconstructing Protein Binding of Sulfonamides and Sulfonamide Analogues. Jacs Au (2023)

Release Date

2023-09-06

Peptides

Peptidyl-prolyl cis-trans isomerase FKBP1A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase FKBP1A

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