SMTL ID : 8dey.2 (1 other biounit)

Ternary complex structure of Cereblon-DDB1 bound to IKZF2(ZF2,3) and the molecular glue DKY709

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

hetero-1-1-1-mer

Ligands

3 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.254, C.257, C.322, C.325 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.254, A:C.257, A:C.322, A:C.325 ZN.2: 4 residues within 4Å: Chain C: C.7, C.10, H.23, H.27 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.7, C:C.10, C:H.23, C:H.27 ZN.3: 4 residues within 4Å: Chain C: C.35, C.38, H.51, H.55 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:C.35, C:C.38, C:H.51, C:H.55

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonazzi, S. et al., Discovery and characterization of a selective IKZF2 glue degrader for cancer immunotherapy. Cell Chem Biol (2023)

Release Date

2023-03-08

Peptides

Protein cereblon: A
DNA damage-binding protein 1: B
Zinc finger protein Helios: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

Protein cereblon

DNA damage-binding protein 1

Zinc finger protein Helios

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