SMTL ID : 8rox.1

Structure of the human DDB1-DDA1-DCAF15 E3 ubiquitin ligase bound to compound furan 12

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

1 x 01: 5-[[3,4-bis(chloranyl)-1~{H}-indol-7-yl]sulfamoyl]-~{N},~{N},3-trimethyl-furan-2-carboxamide;ethane

01.1: 7 residues within 4Å: Chain A: T.233, Q.235, P.236, A.237, F.238, V.559, L.566 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Q.235, A:F.238, A:L.566 Hydrogen bonds: A:Q.235, A:A.237, A:F.238

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lucas, S.C.C. et al., Optimization of Potent Ligands for the E3 Ligase DCAF15 and Evaluation of Their Use in Heterobifunctional Degraders. J.Med.Chem. (2024)

Release Date

2024-04-03

Peptides

DDB1- and CUL4-associated factor 15: A
DNA damage-binding protein 1: B
DET1- and DDB1-associated protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

DDB1- and CUL4-associated factor 15

DNA damage-binding protein 1

DET1- and DDB1-associated protein 1

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