SMTL ID : 6ud7.1

Crystal structure of full-length human DCAF15-DDB1(deltaBPB)-DDA1-RBM39 in complex with indisulam

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: Y.223, P.230, T.231, F.232, Q.237, N.247 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:P.230, A:Q.237, A:N.247 Water bridges: A:T.231, A:T.231 GOL.3: 6 residues within 4Å: Chain B: E.571, F.572, N.573, T.612, K.613, G.614 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.573, B:T.612, B:G.614, B:G.614

1 x EF6: N~1~-(3-chloro-1H-indol-7-yl)benzene-1,4-disulfonamide(Non-covalent)

EF6.2: 12 residues within 4Å: Chain A: T.231, F.232, Q.233, P.234, A.235, F.236, V.557, V.560, M.561, L.564 Chain C: D.17, M.18 10 PLIP interactions: 9 interactions with chain A, 1 interactions with chain C Hydrophobic interactions: A:A.235, A:F.236, A:V.560, A:V.560 Hydrogen bonds: A:F.232, A:F.232, A:A.235, A:F.236 pi-Stacking: A:F.236 Water bridges: C:T.15

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bussiere, D.E. et al., Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex. Nat.Chem.Biol. (2020)

Release Date

2019-12-18

Peptides

DDB1- and CUL4-associated factor 15: A
DNA damage-binding protein 1,DNA damage-binding protein 1: B
RNA-binding motif protein 39: C
DET1- and DDB1-associated protein 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DDB1- and CUL4-associated factor 15

DNA damage-binding protein 1,DNA damage-binding protein 1

RNA-binding motif protein 39

DET1- and DDB1-associated protein 1

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