SMTL ID : 6ue5.1

Crystal structure of full-length human DCAF15-DDB1-deltaPBP-DDA1-RBM39 in complex with 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzenesulfonamide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.61 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x Q5J: 4-(aminomethyl)-N-(3-cyano-4-methyl-1H-indol-7-yl)benzene-1-sulfonamide(Non-covalent)

Q5J.1: 14 residues within 4Å: Chain A: T.231, F.232, Q.233, P.234, A.235, F.236, V.478, R.553, C.556, V.557, L.564 Chain C: T.15, D.17, M.18 11 PLIP interactions: 8 interactions with chain A, 3 interactions with chain C Hydrophobic interactions: A:A.235, A:F.236, A:V.478, A:V.557, C:T.15 Hydrogen bonds: A:F.232, A:F.232, A:A.235, A:F.236, C:N.13 Water bridges: C:M.18

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain B: E.571, F.572, N.573, T.612, G.614 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.573, B:T.612, B:T.612, B:G.614

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bussiere, D.E. et al., Structural basis of indisulam-mediated RBM39 recruitment to DCAF15 E3 ligase complex. Nat.Chem.Biol. (2020)

Release Date

2019-12-18

Peptides

DDB1- and CUL4-associated factor 15: A
DNA damage-binding protein 1,DNA damage-binding protein 1: B
RBM39: C
DET1- and DDB1-associated protein 1: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

DDB1- and CUL4-associated factor 15

DNA damage-binding protein 1,DNA damage-binding protein 1

RBM39

DET1- and DDB1-associated protein 1

Related Entries With Identical Sequence