SMTL ID : 8dkn.1

PPARg bound to T0070907 and Co-R peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

hetero-1-1-mer

Ligands

1 x EEY: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide(Covalent)

EEY.1: 14 residues within 4Å: Chain A: I.77, F.78, C.81, Q.82, H.119, Y.123, F.159, M.160, K.163, H.245, L.248, Y.269, L.272, Y.273 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:I.77, A:F.78, A:Q.82, A:Y.273 Hydrogen bonds: A:Q.82, A:Y.273 pi-Stacking: A:H.245

2 x CXS: 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID(Non-covalent)

CXS.2: 8 residues within 4Å: Chain A: R.84, I.122, M.125, L.126, E.139, D.271, L.272, Y.273 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.122, A:Y.273 Hydrogen bonds: A:E.139 CXS.3: 7 residues within 4Å: Chain A: Q.79, Q.82, F.83, V.86 Chain B: G.3, L.4 Ligands: SO4.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.83, A:V.86 Hydrogen bonds: A:Q.79, A:Q.82

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 3 residues within 4Å: Chain B: G.3, L.4 Ligands: CXS.3 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:K.115 Hydrogen bonds: B:L.4, B:E.5

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irwin, S. et al., Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists. J.Biol.Chem. (2022)

Release Date

2022-09-07

Peptides

Peroxisome proliferator-activated receptor gamma: A
Nuclear receptor corepressor 1 peptide: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Peroxisome proliferator-activated receptor gamma

Nuclear receptor corepressor 1 peptide

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