SMTL ID : 8dsz.1

PPARg bound to partial agonist H3B-487

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x TJO: (2R)-2-{5-[(5-{[(1R)-1-(4-tert-butylphenyl)ethyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]-2-chlorophenoxy}propanoic acid(Non-covalent)

TJO.1: 21 residues within 4Å: Chain A: K.61, I.77, F.78, G.80, C.81, Q.82, R.84, S.85, H.119, Y.123, L.126, L.129, I.137, S.138, F.159, M.160, K.163, H.245, L.249, M.259, Y.269 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.78, A:L.126, A:L.129, A:I.137, A:L.249, A:L.249 Hydrogen bonds: A:K.61, A:S.85, A:S.85, A:Y.123, A:S.138, A:K.163 pi-Stacking: A:F.159 TJO.2: 21 residues within 4Å: Chain B: H.62, I.77, G.80, C.81, Q.82, R.84, S.85, H.119, I.122, Y.123, L.126, L.129, I.137, S.138, F.159, M.160, K.163, H.245, Y.269, K.270, D.271 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:I.77, B:Q.82, B:Y.123, B:L.126, B:L.129, B:I.137 Hydrogen bonds: B:S.85, B:S.85, B:S.138 Salt bridges: B:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irwin, S. et al., Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists. J.Biol.Chem. (2022)

Release Date

2022-09-07

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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