SMTL ID : 5ji0.1 (2 other biounits)

PPARgamma-RXRalpha(S427F) heterodimer in complex with SRC-1, rosiglitazone, and 9-cis-retanoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

hetero-oligomer

Ligands

1 x 9CR: (9cis)-retinoic acid(Non-covalent)

9CR.1: 11 residues within 4Å: Chain A: I.48, Q.55, W.85, L.89, F.93, R.96, L.106, A.107, V.122, C.212, L.216 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:I.48, A:I.48, A:Q.55, A:W.85, A:L.89, A:F.93, A:F.93, A:L.106, A:V.122, A:L.216, A:L.216 Hydrogen bonds: A:Q.55, A:A.107 Salt bridges: A:R.96

1 x BRL: 2,4-THIAZOLIDIINEDIONE, 5-[[4-[2-(METHYL-2-PYRIDINYLAMINO)ETHOXY]PHENYL]METHYL]-(9CL)(Non-covalent)

BRL.2: 15 residues within 4Å: Chain B: I.77, F.78, G.80, C.81, Q.82, S.85, H.119, Y.123, L.126, V.135, I.137, M.160, H.245, L.249, Y.269 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:I.137 Hydrogen bonds: B:Q.82, B:S.85, B:Y.269, B:Y.269

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Korpal, M. et al., PPARgamma-RXRalpha(S427F) heterodimer in complex with SRC-1, rosiglitazone, and 9-cis-retanoic acid. To Be Published

Release Date

2017-04-26

Peptides

Retinoic acid receptor RXR-alpha: A
Peroxisome proliferator-activated receptor gamma: B
Nuclear receptor coactivator 1: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

C
E

D
F

Retinoic acid receptor RXR-alpha

Peroxisome proliferator-activated receptor gamma

Nuclear receptor coactivator 1

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