SMTL ID : 8dsy.1

PPARg bound to inverse agonist H3B-343

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

homo-dimer

Ligands

2 x TJC: {5-[(5-{[(4-tert-butylphenyl)methyl]carbamoyl}-2,3-dimethyl-1H-indol-1-yl)methyl]-2-chlorophenoxy}acetic acid(Non-covalent)

TJC.1: 21 residues within 4Å: Chain A: I.77, G.80, C.81, Q.82, R.84, S.85, V.89, V.118, H.119, I.122, Y.123, L.126, L.129, V.135, I.137, S.138, M.160, K.163, H.245, L.265, I.268 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.89, A:V.118, A:I.122, A:L.126, A:L.126, A:L.129, A:V.135, A:I.137, A:I.268 Hydrogen bonds: A:S.85, A:S.85, A:Y.123, A:S.138, A:K.163 TJC.2: 23 residues within 4Å: Chain B: I.77, G.80, C.81, Q.82, R.84, S.85, V.86, V.89, H.119, I.122, Y.123, L.126, L.129, I.137, S.138, M.144, F.159, M.160, K.163, H.245, K.270, D.271, L.272 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.86, B:V.89, B:I.122, B:I.122, B:L.126, B:L.129, B:I.137, B:L.272 Hydrogen bonds: B:S.85, B:S.85, B:S.138, B:K.163 Water bridges: B:Q.82 Salt bridges: B:H.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Irwin, S. et al., Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists. J.Biol.Chem. (2022)

Release Date

2022-09-07

Peptides

Peroxisome proliferator-activated receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peroxisome proliferator-activated receptor gamma

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