SMTL ID : 8fxe.1

Bromodomain of CBP liganded with iCBP6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.55 Å

Oligo State

monomer

Ligands

1 x YID: (6S)-1-(3-tert-butylphenyl)-6-{(5P)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one(Non-covalent)

YID.1: 12 residues within 4Å: Chain A: L.31, P.32, F.33, V.37, L.42, I.44, Y.47, Y.89, N.90, R.95, V.96, F.99 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.31, A:P.32, A:P.32, A:F.33, A:V.37, A:L.42, A:L.42, A:I.44, A:Y.89, A:V.96, A:V.96, A:F.99 Hydrogen bonds: A:N.90, A:R.95, A:R.95 Water bridges: A:Y.47 pi-Cation interactions: A:R.95

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 4 residues within 4Å: Chain A: R.13, Q.14, M.17, P.18 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.13 Water bridges: A:R.13, A:R.13 EDO.3: 5 residues within 4Å: Chain A: P.9, E.10, R.13, L.64, D.65 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.10, A:D.65 Water bridges: A:R.13

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shendy, N.A.M. et al., Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition. Nat Commun (2024)

Release Date

2024-02-07

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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