SMTL ID : 8fxn.1

Bromodomain of CBP liganded with iCBP7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x YN0: tert-butyl {(1R,4s)-4-[(5M)-2-[(2S)-1-(3-tert-butylphenyl)-6-oxopiperidin-2-yl]-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1H-benzimidazol-1-yl]cyclohexyl}carbamate(Non-covalent)

YN0.1: 14 residues within 4Å: Chain A: P.25, L.28, P.29, F.30, Q.32, V.34, L.38, L.39, I.41, Y.44, N.87, R.92, V.93, F.96 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.25, A:P.29, A:P.29, A:F.30, A:L.38, A:L.39, A:L.39, A:I.41, A:V.93, A:F.96 Hydrogen bonds: A:N.87 pi-Cation interactions: A:R.92

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 1 residues within 4Å: Chain A: W.77 No protein-ligand interaction detected (PLIP) EDO.3: 1 residues within 4Å: Chain A: Q.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.23, A:Q.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schonbrunn, E. et al., Group 3 medulloblastoma transcriptional networks are sensitive to EP300/CBP bromodomain inhibition. To be published

Release Date

2024-02-07

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

Related Entries With Identical Sequence