SMTL ID : 8fxo.1

Bromodomain of CBP liganded with iCBP8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.74 Å

Oligo State

monomer

Ligands

1 x YN5: (6S)-1-(2,3-dihydro-1,4-benzodioxin-6-yl)-6-{(5M)-5-(3,5-dimethyl-1,2-oxazol-4-yl)-1-[(1s,4R)-4-methoxycyclohexyl]-1H-benzimidazol-2-yl}piperidin-2-one(Non-covalent)

YN5.1: 14 residues within 4Å: Chain A: P.25, L.28, P.29, F.30, Q.32, V.34, L.39, I.41, Y.44, Y.86, N.87, R.92, V.93, F.96 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.29, A:P.29, A:F.30, A:V.34, A:L.39, A:L.39, A:I.41, A:Y.86, A:V.93, A:V.93 Hydrogen bonds: A:N.87, A:R.92, A:R.92 Water bridges: A:Y.44 pi-Cation interactions: A:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shendy, N.A.M. et al., Group 3 medulloblastoma transcriptional networks collapse under domain specific EP300/CBP inhibition. Nat Commun (2024)

Release Date

2024-02-07

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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